scPDB - Distribution of Binding site Similarity values of 2v2v entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2v2v	V12	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2v2v	V12	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	1.000
2v2q	NVG	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.649
2v34	CTN	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.494
2v2z	CDM	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.487
4emd	C5P	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.474
2v8p	CDP	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	/	0.463
3gjw	GJW	Poly [ADP-ribose] polymerase 1	2.4.2.30	0.442