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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2tdmUMPThymidylate synthase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2tdmUMPThymidylate synthase/1.000
1tsvUMPThymidylate synthase/0.699
2g86UMPThymidylate synthase/0.691
1vzbUMPThymidylate synthase/0.671
2g8aUMPThymidylate synthase/0.644
1bpjUMPThymidylate synthase/0.638
1jmgUMPThymidylate synthase/0.629
1tsxUMPThymidylate synthase/0.625
1njeDCMThymidylate synthase/0.623
1jmiUMPThymidylate synthase/0.615
1njdUMPThymidylate synthase/0.613
2g89UMPThymidylate synthase/0.599
1tsyUMPThymidylate synthase/0.597
1bp6UMPThymidylate synthase/0.575
1jmhUMPThymidylate synthase/0.538
1njbUMPThymidylate synthase/0.536
1jmfUMPThymidylate synthase/0.533
1njaDCMThymidylate synthase/0.519
1vzaUMPThymidylate synthase/0.512
3bgxTMPThymidylate synthase/0.512
1bidUMPThymidylate synthase/0.504
1lcbTMPThymidylate synthase/0.502
1aobDDUThymidylate synthase/0.470
1thyUMPThymidylate synthase/0.462
1njcDCMThymidylate synthase/0.452
2vetUMPThymidylate synthase/0.441
4dpdUMPBifunctional dihydrofolate reductase-thymidylate synthase/0.441
2g8dUMPThymidylate synthase/0.440