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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2rghFADAlpha-Glycerophosphate Oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2rghFADAlpha-Glycerophosphate Oxidase/1.000
3if9FADGlycine oxidase1.4.3.190.466
1ng3FADGlycine oxidase1.4.3.190.463
5ez7FADProbable FAD-dependent oxidoreductase PA4991/0.462
4c3xFAD3-ketosteroid dehydrogenase/0.461
3cukFADD-amino-acid oxidase1.4.3.30.456
1ryiFADGlycine oxidase1.4.3.190.450
1d7lRFLp-hydroxybenzoate hydroxylase/0.449
4c3yFAD3-ketosteroid dehydrogenase/0.448
3da1FADGlycerol-3-phosphate dehydrogenase/0.446
2du8FADD-amino-acid oxidase1.4.3.30.444
1kifFADD-amino-acid oxidase1.4.3.30.443
1ng4FADGlycine oxidase1.4.3.190.443
3slkNDPPolyketide synthase extender module 2/0.440
5hxwFADL-amino acid deaminase/0.440