Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2qiq | CYV | Replicase polyprotein 1ab |
PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
---|---|---|---|---|---|
2qiq | CYV | Replicase polyprotein 1ab | / | 1.000 | |
3v3m | 0EN | Replicase polyprotein 1a | 3.4.19.12 | 0.551 | |
2gz7 | D3F | Orf1a polyprotein | / | 0.507 | |
2op9 | WR1 | Orf1ab polyprotein | / | 0.482 | |
2gz8 | F3F | Orf1a polyprotein | / | 0.478 | |
2gtb | AZP | Orf1ab polyprotein | / | 0.452 | |
3ig6 | 438 | Urokinase-type plasminogen activator | 3.4.21.73 | 0.451 | |
2a5k | AZP | Replicase polyprotein 1ab | 3.4.22 | 0.448 | |
5dp2 | NAP | CurF | / | 0.448 | |
2vn1 | FK5 | Peptidylprolyl isomerase | / | 0.442 |