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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2q97ATPActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2q97ATPActin, alpha skeletal muscle/1.000
1lotATPActin, alpha skeletal muscle/0.613
1t44ATPActin, alpha skeletal muscle/0.612
4pl8ATPActin, alpha skeletal muscle/0.602
1rgiATPActin, alpha skeletal muscle/0.598
3ffkATPActin, alpha skeletal muscle/0.589
5ce3ATPActin/0.583
4jhdANPActin-5C/0.582
1s22ATPActin, alpha skeletal muscle/0.580
4pkgATPActin, alpha skeletal muscle/0.577
3m6gATPActin, alpha skeletal muscle/0.576
1qz5ATPActin, alpha skeletal muscle/0.575
4ci6ATPActin/0.573
2q36ATPActin, alpha skeletal muscle/0.572
4k42ADPActin, alpha skeletal muscle/0.572
3a5mATPMajor actin/0.569
1c0fATPMajor actin/0.564
3tu5ATPActin, alpha skeletal muscle/0.562
3mn6ATPActin-5C/0.561
1ijjATPActin, alpha skeletal muscle/0.556
4k41ATPActin, alpha skeletal muscle/0.556
2v51ATPActin, alpha skeletal muscle/0.555
1h1vATPActin, alpha skeletal muscle/0.550
4m63ATPActin-5C/0.548
1yxqATPActin, alpha skeletal muscle/0.546
4pkhADPActin, alpha skeletal muscle/0.545
3mn9ATPActin-5C/0.542
4cbxATPActin-2/0.539
1nm1ATPMajor actin/0.538
1nmdATPMajor actin/0.538
4pkiATPActin, alpha skeletal muscle/0.535
3u9dATPActin, alpha skeletal muscle/0.534
1mduATPActin, alpha skeletal muscle/0.529
3dawATPActin, alpha skeletal muscle/0.528
3m1fATPActin, alpha skeletal muscle/0.524
3u4lATPActin, cytoplasmic 1/0.524
4k43ADPActin, alpha skeletal muscle/0.523
1eqyATPActin, alpha skeletal muscle/0.519
1wuaATPActin, alpha skeletal muscle/0.515
3el2ATPActin-5C/0.512
1kxpATPActin, alpha skeletal muscle/0.507
3w3dATPActin, gamma-enteric smooth muscle/0.505
4rwtANPActin-5C/0.500
2p9kATPActin-related protein 2/0.495
3ekuATPActin-5C/0.495
3mn7ATPActin-5C/0.494
3chwATPMajor actin/0.489
2oanATPActin, cytoplasmic 1/0.485
1dejATPMajor actin/0.482
3eksATPActin-5C/0.481
1nlvATPMajor actin/0.476
3a5oATPMajor actin/0.476
2a41ATPActin, alpha skeletal muscle/0.452