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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2q5oTPWIndole-3-pyruvate decarboxylase4.1.1.74

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2q5oTPWIndole-3-pyruvate decarboxylase4.1.1.741.000
2q5qTPWIndole-3-pyruvate decarboxylase4.1.1.740.716
4zp1TPPPyruvate decarboxylase4.1.1.10.591
1y9dTPPPyruvate oxidase1.2.3.30.542
5ahkTPPAcetolactate synthase II, large subunit/0.535
2ihuTP9N(2)-(2-carboxyethyl)arginine synthase/0.533
3ey9TDPPyruvate dehydrogenase [ubiquinone]1.2.5.10.531
2panTDPGlyoxylate carboligase4.1.1.470.525
1upaTPPN(2)-(2-carboxyethyl)arginine synthase/0.519
2jlcTPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.519
5ej7TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.517
5ej4TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.514
1upbTPPN(2)-(2-carboxyethyl)arginine synthase/0.508
1upcTPPN(2)-(2-carboxyethyl)arginine synthase/0.504
1pydTDPPyruvate decarboxylase isozyme 1/0.503
4k9oTPPBenzoylformate decarboxylase4.1.1.70.503
4k9nTZDBenzoylformate decarboxylase4.1.1.70.501
1mczTDPBenzoylformate decarboxylase4.1.1.70.498
2ag0TPPBenzaldehyde lyase/0.496
4jufTPPBenzoylformate decarboxylase4.1.1.70.496
5ej9TPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.492
1ozhHE3Acetolactate synthase, catabolic2.2.1.60.491
1ra3NAPDihydrofolate reductase1.5.1.30.490
2ihvTPPN(2)-(2-carboxyethyl)arginine synthase/0.489
2jlaTPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.489
2ihtTPPN(2)-(2-carboxyethyl)arginine synthase/0.488
5esoTDP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.488
1ovmTPPIndole-3-pyruvate decarboxylase4.1.1.740.486
2ag1TPPBenzaldehyde lyase/0.486
3etgNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.485
5ejaTD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.484
2xckMH43-phosphoinositide-dependent protein kinase 12.7.11.10.483
3stxBKAMethylketone synthase I/0.480
5esdTDP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.479
1pvdTPPPyruvate decarboxylase isozyme 1/0.478
2xpuTDCTetracycline repressor protein class D/0.478
4jubTPPBenzoylformate decarboxylase4.1.1.70.478
2x7jTPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.476
2w93TPPPyruvate decarboxylase isozyme 1/0.469
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.469
2uz1TPPBenzaldehyde lyase/0.467
1hwzNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.465
4k9pTPPBenzoylformate decarboxylase4.1.1.70.465
4y9qC2EUncharacterized protein/0.465
2v3wTPPBenzoylformate decarboxylase4.1.1.70.464
5ej6TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.464
2hcdBIVVitamin D3 receptor A/0.463
2vk4TPPPyruvate decarboxylase4.1.1.10.463
3mdvCL6Cholesterol 24-hydroxylase/0.463
4g1z0VPVitamin D3 receptor A/0.463
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.462
3cgfJNFMitogen-activated protein kinase 102.7.11.240.461
3eteNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.461
3kybFADUDP-galactopyranose mutase5.4.99.90.461
3livE16Protease/0.461
4bidIE8Mitogen-activated protein kinase kinase kinase 52.7.11.250.461
2b0m201Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.460
3ih0ANPUncharacterized sugar kinase PH14592.7.10.460
5br7FADUDP-galactopyranose mutase/0.460
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.459
4i22IREEpidermal growth factor receptor2.7.10.10.459
4z24FADPutative GMC-type oxidoreductase R13510.459
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.459
1p0hACOMycothiol acetyltransferase2.3.1.1890.458
1ysx4EBSerum albumin/0.458
2harOCCVitamin D3 receptor/0.458
2z3uCRRCytochrome P450/0.458
3oe1TDLPyruvate decarboxylase4.1.1.10.458
4ks8B49Serine/threonine-protein kinase PAK 62.7.11.10.458
4ly91YYGlucokinase regulatory protein/0.458
2yirYIRSerine/threonine-protein kinase Chk22.7.11.10.457
3w0yDS4Vitamin D3 receptor/0.457
4jbqVX6Aurora kinase A2.7.11.10.457
4uyf73BBromodomain-containing protein 2/0.457
3sn6P0GBeta-2 adrenergic receptor/0.457
1db1VDXVitamin D3 receptor/0.456
1xq6NAPUncharacterized protein At5g02240/0.456
1ybmNAPUncharacterized protein At5g02240/0.456
2vbdV10Isopenicillin N synthase1.21.3.10.456
3v8w0G2Tyrosine-protein kinase ITK/TSK2.7.10.20.456
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.456
1likADNAdenosine kinase2.7.1.200.455
1qpbTPPPyruvate decarboxylase isozyme 1/0.455
2b7aIZATyrosine-protein kinase JAK2/0.455
2bu9HFVIsopenicillin N synthase1.21.3.10.455
2qnqQN3Gag-Pol polyprotein3.4.23.160.455
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.455
3vt7VDXVitamin D3 receptor/0.455
4dfrMTXDihydrofolate reductase1.5.1.30.455
3a60STURibosomal protein S6 kinase beta-12.7.11.10.454
3crlANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.454
5fs7FADApoptosis-inducing factor 1, mitochondrial1.1.10.454
1bygSTUTyrosine-protein kinase CSK/0.453
1qvnFRIInterleukin-2/0.453
3gbuATPUncharacterized sugar kinase PH14592.7.10.453
3ortAGSSerine/threonine protein kinase/0.453
3sayOFTGlycogen synthase kinase-3 beta2.7.11.260.453
3t3c017Gag-Pol polyprotein3.4.23.160.453
4a6cQG9Gag-Pol polyprotein3.4.23.160.453
2bu8ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.452
2ch6ADPN-acetyl-D-glucosamine kinase2.7.1.590.452
2o1xTDP1-deoxy-D-xylulose-5-phosphate synthase2.2.1.70.452
2v4lABJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.452
2zl9VDAVitamin D3 receptor/0.452
3a1l2CCCytochrome P450/0.452
3r7kFDAProbable acyl CoA dehydrogenase/0.452
4b8wNAPGDP-L-fucose synthase1.1.1.2710.452
4ia3BIVVitamin D3 receptor A/0.452
4jlcSU6Serine/threonine-protein kinase TBK12.7.11.10.452
4nh82LCHeat shock protein HSP 90-alpha/0.452
4xcvNDPProbable hydroxyacid dehydrogenase protein/0.452
5k2aZMAAdenosine receptor A2a/0.452
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.451
1uy7PU4Heat shock protein HSP 90-alpha/0.451
2fvlNAPAldo-keto reductase family 1 member C41.1.1.2250.451
3a783EVVitamin D3 receptor/0.451
3el4ROCGag-Pol polyprotein3.4.23.160.451
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.451
3lzu017Gag-Pol polyprotein3.4.23.160.451
3vt9YI4Vitamin D3 receptor/0.451
1qy5NECEndoplasmin/0.450
1uyePU9Heat shock protein HSP 90-alpha/0.450
2cduFADNADH oxidase/0.450
2izrBRKCasein kinase I isoform gamma-32.7.11.10.450
2vcmM11Isopenicillin N synthase1.21.3.10.450
2xb5I7TTetracycline repressor protein class D/0.450
3kpzZNEVitamin D3 receptor/0.450
3w0jT08Vitamin D3 receptor/0.450
4jazSTLPeroxisome proliferator-activated receptor gamma/0.450
4o2bLOCTubulin beta-2B chain/0.450
4xj43ATCyclic GMP-AMP synthase/0.450
4yduADPtRNA N6-adenosine threonylcarbamoyltransferase/0.450
1glfADPGlycerol kinase/0.449
1npvL27Gag-Pol polyprotein3.4.23.160.449
1osvCHCBile acid receptor/0.449
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.449
1xkvATPPhosphoenolpyruvate carboxykinase (ATP)/0.449
2j3jHC4NADPH-dependent oxidoreductase 2-alkenal reductase1.3.1.740.449
3lq2TDPPyruvate dehydrogenase E1 component1.2.4.10.449
3p2eSAH16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.1800.449
3vrwYS5Vitamin D3 receptor/0.449
4dqc017Gag-Pol polyprotein/0.449
1bk0ACVIsopenicillin N synthase1.21.3.10.448
1oc1ASVIsopenicillin N synthase1.21.3.10.448
1ryiFADGlycine oxidase1.4.3.190.448
2o12FMNChorismate synthase/0.448
2qbnCAMCamphor 5-monooxygenase1.14.15.10.448
2vnaNAPProstaglandin reductase 21.3.1.480.448
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.448
3nxxNDPDihydrofolate reductase1.5.1.30.448
3qm4PN0Cytochrome P450 2D6/0.448
4hjoAQ4Epidermal growth factor receptor2.7.10.10.448
4l8u9AZSerum albumin/0.448
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
1kkq471Peroxisome proliferator-activated receptor alpha/0.447
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.447
2b53D23Cyclin-dependent kinase 22.7.11.220.447
2iviACWIsopenicillin N synthase1.21.3.10.447
4b7dQLECytochrome P450 monooxygenase PikC/0.447
4l9kEHFSerum albumin/0.447
5bqfNAPProbable hydroxyacid dehydrogenase protein/0.447
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
4z34ON7Lysophosphatidic acid receptor 1/0.447
2qi4MZ6Gag-Pol polyprotein/0.446
2znpK55Peroxisome proliferator-activated receptor delta/0.446
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.446
4bdcODHSerine/threonine-protein kinase Chk22.7.11.10.446
4g210VPVitamin D3 receptor A/0.446
4gb20LQGag-Pol polyprotein2.7.7.490.446
5c88COAN-alpha-acetyltransferase/0.446
1gleADPGlycerol kinase/0.445
1hb1OCVIsopenicillin N synthase1.21.3.10.445
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
1pjkANPCasein kinase II subunit alpha2.7.11.10.445
1trgCB3Thymidylate synthase/0.445
2b9wFADPutative aminooxidase/0.445
2q4bNAPUncharacterized protein At5g02240/0.445
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.445
3hwxTPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.445
3lkiATPFructokinase/0.445
3v9y24LPeroxisome proliferator-activated receptor gamma/0.445
4dqh017Gag-Pol polyprotein/0.445
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.445
4yr9NADL-threonine 3-dehydrogenase, mitochondrial1.1.1.1030.445
5dosATPAurora kinase A2.7.11.10.445
5ej8TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.445
5il2SAHN6-adenosine-methyltransferase 70 kDa subunit/0.445
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
1gii1PUCyclin-dependent kinase 22.7.11.220.444
1gjvAGS[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial2.7.11.40.444
1q4t4CO4-hydroxybenzoyl-CoA thioesterase3.1.2.230.444
2e0aANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.444
2fy4COACholine O-acetyltransferase2.3.1.60.444
2j4z626Aurora kinase A2.7.11.10.444
2ycfYCFSerine/threonine-protein kinase Chk22.7.11.10.444
3a1nNADNDP-sugar epimerase/0.444
3bu5ATPInsulin receptor2.7.10.10.444
3d2pCOAAmino-acid acetyltransferase/0.444
3gw9VNILanosterol 14-alpha-demethylase/0.444
3pgpACOUncharacterized protein/0.444
3zuyTCHTransporter/0.444
4bcrWY1Peroxisome proliferator-activated receptor alpha/0.444
4o701QKBromodomain-containing protein 4/0.444
4ww0ADPATP-dependent zinc metalloprotease FtsH/0.444
1bsvNDPGDP-L-fucose synthase/0.443
1h1s4SPCyclin-dependent kinase 22.7.11.220.443
1hosPHPGag-Pol polyprotein/0.443
1itzTPPTransketolase, chloroplastic2.2.1.10.443
1jioDEB6-deoxyerythronolide B hydroxylase/0.443
1nzdUPGDNA beta-glucosyltransferase/0.443
2a94AP0L-lactate dehydrogenase1.1.1.270.443
2c31TZDOxalyl-CoA decarboxylase4.1.1.80.443
2q70DC8Estrogen receptor/0.443
2qi0MZ3Gag-Pol polyprotein/0.443
3c0i3AMPeripheral plasma membrane protein CASK2.7.11.10.443
3lpbNVBTyrosine-protein kinase JAK2/0.443
3lu8IQXSerum albumin/0.443
3r4pFU7Heat shock protein HSP 90-alpha/0.443
4gyiADPUncharacterized protein/0.443
4ylfFADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog/0.443
5c03AGSNon-receptor tyrosine-protein kinase TYK22.7.10.20.443
1glbADPGlycerol kinase/0.442
1pr9NAPL-xylulose reductase1.1.1.100.442
1t85CAMCamphor 5-monooxygenase1.14.15.10.442
1ykr628Cyclin-dependent kinase 22.7.11.220.442
2b9fADPMitogen-activated protein kinase FUS32.7.11.240.442
2gmhFADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial1.5.5.10.442
2tpsTPSThiamine-phosphate synthase/0.442
3ec0GRLGag-Pol polyprotein3.4.23.470.442
3lqfNADGalactitol dehydrogenase/0.442
3qrwNDPPutative ketoacyl reductase1.3.10.442
3t113T1Gag-Pol polyprotein3.4.23.160.442
4achKDIGlycogen synthase kinase-3 beta2.7.11.260.442
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.442
4ryvZEAProtein LlR18A/0.442
4wboANWRhodopsin kinase/0.442
1ae1NAPTropinone reductase 1/0.441
1g4tFTPThiamine-phosphate synthase/0.441
1ipeNDPTropinone reductase 21.1.1.2360.441
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.441
1u7tNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.441
1uyhPU0Heat shock protein HSP 90-alpha/0.441
2e9uA25Serine/threonine-protein kinase Chk12.7.11.10.441
2h55DZ8Heat shock protein HSP 90-alpha/0.441
2hc0AB2Protease/0.441
2q7vFADThioredoxin reductase/0.441
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.441
2y8qADP5'-AMP-activated protein kinase subunit gamma-1/0.441
2ycrHCWSerine/threonine-protein kinase Chk22.7.11.10.441
2z6iFMN2-nitropropane dioxygenase/0.441
3bbrBHYGlutamate receptor 2/0.441
3bgbLJGGag-Pol polyprotein3.4.23.160.441
3frqERYErythromycin resistance repressor protein/0.441
3l0lHC3Nuclear receptor ROR-gamma/0.441
3umpATPATP-dependent 6-phosphofructokinase isozyme 22.7.1.110.441
3w8eNAD3-hydroxybutyrate dehydrogenase/0.441
4e5yNDPGDP-L-fucose synthase1.1.1.2710.441
4fv9E71Mitogen-activated protein kinase 12.7.11.240.441
4hseADPChaperone protein ClpB/0.441
4rujVDXVitamin D3 receptor A/0.441
1dxoFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440
1eupASD6-deoxyerythronolide B hydroxylase/0.440
1obnASVIsopenicillin N synthase1.21.3.10.440
1q5kTMUGlycogen synthase kinase-3 beta2.7.11.260.440
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.440
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.440
2ftoCB3Thymidylate synthase/0.440
2givACOHistone acetyltransferase KAT8/0.440
2ittAEEEpidermal growth factor receptor2.7.10.10.440
2jb4A14Isopenicillin N synthase1.21.3.10.440
2jdvL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440
2x3nFADProbable FAD-dependent monooxygenase/0.440
3dk1G05Gag-Pol polyprotein3.4.23.160.440
3ekt017Gag-Pol polyprotein3.4.23.160.440
3hrfATP3-phosphoinositide-dependent protein kinase 12.7.11.10.440
3kgcLY7Glutamate receptor 2/0.440
3r2b05BMAP kinase-activated protein kinase 22.7.11.10.440
3w0gW07Vitamin D3 receptor/0.440
3zep1NXTyrosine-protein kinase JAK32.7.10.20.440
4aosFADSteroid monooxygenase/0.440
4e37NDPCatalase1.11.1.60.440
4f9mFCMPeroxisome proliferator-activated receptor gamma/0.440
4fod0UVALK tyrosine kinase receptor2.7.10.10.440
4hjfC2EGGDEF family protein/0.440
4jlj1NMDeoxycytidine kinase2.7.1.740.440