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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2q36ATPActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2q36ATPActin, alpha skeletal muscle/1.000
4k42ADPActin, alpha skeletal muscle/0.616
1t44ATPActin, alpha skeletal muscle/0.604
1rgiATPActin, alpha skeletal muscle/0.602
1s22ATPActin, alpha skeletal muscle/0.602
3mn6ATPActin-5C/0.595
1c0fATPMajor actin/0.592
1h1vATPActin, alpha skeletal muscle/0.591
3m6gATPActin, alpha skeletal muscle/0.590
4pkgATPActin, alpha skeletal muscle/0.590
5ce3ATPActin/0.587
4pl8ATPActin, alpha skeletal muscle/0.584
4cbxATPActin-2/0.581
1mduATPActin, alpha skeletal muscle/0.580
4pkhADPActin, alpha skeletal muscle/0.580
1lotATPActin, alpha skeletal muscle/0.579
1qz5ATPActin, alpha skeletal muscle/0.579
1nmdATPMajor actin/0.575
4pkiATPActin, alpha skeletal muscle/0.568
3m1fATPActin, alpha skeletal muscle/0.567
1kxpATPActin, alpha skeletal muscle/0.566
3tu5ATPActin, alpha skeletal muscle/0.563
3el2ATPActin-5C/0.561
3u9dATPActin, alpha skeletal muscle/0.561
3ffkATPActin, alpha skeletal muscle/0.557
4jhdANPActin-5C/0.548
4k41ATPActin, alpha skeletal muscle/0.548
2v51ATPActin, alpha skeletal muscle/0.542
1ijjATPActin, alpha skeletal muscle/0.539
3a5mATPMajor actin/0.538
1eqyATPActin, alpha skeletal muscle/0.533
3mn7ATPActin-5C/0.533
2q97ATPActin, alpha skeletal muscle/0.529
4k43ADPActin, alpha skeletal muscle/0.529
1nm1ATPMajor actin/0.526
4rwtANPActin-5C/0.523
1yxqATPActin, alpha skeletal muscle/0.522
3mn9ATPActin-5C/0.522
3w3dATPActin, gamma-enteric smooth muscle/0.517
2p9kATPActin-related protein 2/0.516
4m63ATPActin-5C/0.512
4ci6ATPActin/0.506
3a5oATPMajor actin/0.505
3u4lATPActin, cytoplasmic 1/0.505
1dejATPMajor actin/0.501
3dawATPActin, alpha skeletal muscle/0.496
2a41ATPActin, alpha skeletal muscle/0.491
2oanATPActin, cytoplasmic 1/0.491
3ekuATPActin-5C/0.470
3eksATPActin-5C/0.469
1wuaATPActin, alpha skeletal muscle/0.468
3chwATPMajor actin/0.456
1nlvATPMajor actin/0.454