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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2pidYSATyrosine--tRNA ligase, mitochondrial6.1.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2pidYSATyrosine--tRNA ligase, mitochondrial6.1.1.11.000
3zxiTYATyrosine--tRNA ligase, mitochondrial6.1.1.10.656
1jil485Tyrosine--tRNA ligase/0.599
1jik545Tyrosine--tRNA ligase/0.561
1vbmYSATyrosine--tRNA ligase6.1.1.10.551
2qujTYMTryptophan--tRNA ligase, cytoplasmic6.1.1.20.477
3ts1TYATyrosine--tRNA ligase6.1.1.10.477
1vbnYSATyrosine--tRNA ligase6.1.1.10.471
3jxeTYMTryptophan--tRNA ligase/0.459
1r6uTYMTryptophan--tRNA ligase, cytoplasmic6.1.1.20.451
3coy53HPantothenate synthetase6.3.2.10.449
3kt3TYMTryptophan--tRNA ligase, cytoplasmic6.1.1.20.447
1n2hPAJPantothenate synthetase6.3.2.10.445
4j75TYMTryptophan--tRNA ligase/0.440