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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2pdtFADVivid PAS protein VVD

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2pdtFADVivid PAS protein VVD/1.000
2pd7FADVivid PAS protein VVD/0.569
3d72FADVivid PAS protein VVD/0.538
3hjiFADVivid PAS protein VVD/0.531
2pd8FADVivid PAS protein VVD/0.525
3hjkFADVivid PAS protein VVD/0.518
3is2FADVivid PAS protein VVD/0.498
4wujFMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy/0.476
2z6dFMNPhototropin-22.7.11.10.473
1n9lFMNPutative blue light receptor/0.460
1n9nFMNPutative blue light receptor/0.456
3d8vUD1Bifunctional protein GlmU/0.456
1pnvTYDdTDP-epi-vancosaminyltransferase2.4.1.3110.448
4eeuFMNPhototropin-22.7.11.10.448
4deeADPAurora kinase A2.7.11.10.446
4eetFMNPhototropin-22.7.11.10.446
5djuFMNNPH1-2/0.444
3t50FMNBlue-light-activated histidine kinase2.7.13.30.443
4u03GTPCyclic GMP-AMP synthase/0.443
1uaeUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.441
2pr5FMNBlue-light photoreceptor/0.441