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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2pd8FADVivid PAS protein VVD

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2pd8FADVivid PAS protein VVD/1.000
3hjkFADVivid PAS protein VVD/0.636
3hjiFADVivid PAS protein VVD/0.606
2pd7FADVivid PAS protein VVD/0.586
3is2FADVivid PAS protein VVD/0.557
3d72FADVivid PAS protein VVD/0.535
2pdtFADVivid PAS protein VVD/0.504
1n9nFMNPutative blue light receptor/0.460
2z6dFMNPhototropin-22.7.11.10.448
4r38RBFBlue-light-activated histidine kinase 22.7.13.30.441
4wujFMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy/0.441