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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2pd7FADVivid PAS protein VVD

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2pd7FADVivid PAS protein VVD/1.000
3hjiFADVivid PAS protein VVD/0.616
2pd8FADVivid PAS protein VVD/0.606
3hjkFADVivid PAS protein VVD/0.592
3d72FADVivid PAS protein VVD/0.581
2pdtFADVivid PAS protein VVD/0.564
3is2FADVivid PAS protein VVD/0.494
4wujFMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy/0.483
2z6dFMNPhototropin-22.7.11.10.466
1n9nFMNPutative blue light receptor/0.459
1pn3TYDdTDP-epi-vancosaminyltransferase2.4.1.3110.459
5cnoANPEpidermal growth factor receptor2.7.10.10.459
1n9lFMNPutative blue light receptor/0.455
4eetFMNPhototropin-22.7.11.10.450
5djuFMNNPH1-2/0.447
3gu7ADPDeath-associated protein kinase 12.7.11.10.444