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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2pb1NFGGlucan 1,3-beta-glucosidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2pb1NFGGlucan 1,3-beta-glucosidase/1.000
3buvNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.466
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.461
3gjwGJWPoly [ADP-ribose] polymerase 12.4.2.300.453
3vilSA0Beta-glucosidase/0.449
2geuCOKPantothenate kinase2.7.1.330.448
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.447
3gf4UPGUDP-galactopyranose mutase5.4.99.90.445
5dp2NAPCurF/0.445
4b1e6T6Beta-secretase 13.4.23.460.444