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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2p9cNAID-3-phosphoglycerate dehydrogenase1.1.1.95

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2p9cNAID-3-phosphoglycerate dehydrogenase1.1.1.951.000
2pa3NAID-3-phosphoglycerate dehydrogenase1.1.1.950.608
2p9eNAID-3-phosphoglycerate dehydrogenase1.1.1.950.588
1ybaNADD-3-phosphoglycerate dehydrogenase1.1.1.950.556
2p9gNAID-3-phosphoglycerate dehydrogenase1.1.1.950.512
1wwkNAD307aa long hypothetical phosphoglycerate dehydrogenase/0.469
1psdNADD-3-phosphoglycerate dehydrogenase1.1.1.950.464
4xcvNDPProbable hydroxyacid dehydrogenase protein/0.457
1dxyNADD-2-hydroxyisocaproate dehydrogenase1.1.10.456