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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2p5uNADUDP-glucose 4-epimerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2p5uNADUDP-glucose 4-epimerase/1.000
4lisNADUDP-glucose 4-epimerase (Eurofung)/0.484
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.478
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.465
4egbNADdTDP-glucose 4,6-dehydratase/0.465
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.464
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.463
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.462
1i3lNADUDP-glucose 4-epimerase/0.458
3a1nNADNDP-sugar epimerase/0.458
2c54NADGDP-mannose 3,5-epimerase5.1.3.180.455
3a4vNADNDP-sugar epimerase/0.455
2c20NADUDP-glucose 4-epimerase/0.454
1naiNADUDP-glucose 4-epimerase5.1.3.20.453
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.452
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.449
1kvrNADUDP-glucose 4-epimerase5.1.3.20.448
1nahNADUDP-glucose 4-epimerase5.1.3.20.448
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.350.448
3ru9NADUDP-N-acetylglucosamine 4-epimerase/0.447
2q1wNADPutative nucleotide sugar epimerase/ dehydratase/0.445
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.445
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.444
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.443
1g1aNADdTDP-glucose 4,6-dehydratase/0.442
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.442
4i5eNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.442