scPDB - Distribution of Binding site Similarity values of 2nom entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2nom	DUT	Poly(A) polymerase, putative

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2nom	DUT	Poly(A) polymerase, putative	/	1.000
2q0f	UTP	Poly(A) polymerase, putative	/	0.553
2ikf	UTP	Poly(A) polymerase, putative	/	0.533
2q0d	ATP	Poly(A) polymerase, putative	/	0.532
2q0c	CTP	Poly(A) polymerase, putative	/	0.498
2q0g	UPU	Poly(A) polymerase, putative	/	0.476