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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2jb4A14Isopenicillin N synthase1.21.3.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2jb4A14Isopenicillin N synthase1.21.3.11.000
2iviACWIsopenicillin N synthase1.21.3.10.889
1hb3SCVIsopenicillin N synthase1.21.3.10.873
1bk0ACVIsopenicillin N synthase1.21.3.10.871
2vbdV10Isopenicillin N synthase1.21.3.10.847
1hb1OCVIsopenicillin N synthase1.21.3.10.841
3zoiM2WIsopenicillin N synthase1.21.3.10.834
2bu9HFVIsopenicillin N synthase1.21.3.10.771
4bb3KKAIsopenicillin N synthase1.21.3.10.770
3zkyWT4Isopenicillin N synthase1.21.3.10.764
1uzwCDHIsopenicillin N synthase1.21.3.10.754
1w06W05Isopenicillin N synthase1.21.3.10.720
1qiqACCIsopenicillin N synthase1.21.3.10.710
2y60M8FIsopenicillin N synthase1.21.3.10.701
1qjfACSIsopenicillin N synthase1.21.3.10.691
1obnASVIsopenicillin N synthase1.21.3.10.667
1oc1ASVIsopenicillin N synthase1.21.3.10.651
2vbpVB1Isopenicillin N synthase1.21.3.10.651
2vcmM11Isopenicillin N synthase1.21.3.10.638
3zkuHCVIsopenicillin N synthase1.21.3.10.618
2wo7ASVIsopenicillin N synthase1.21.3.10.617
1blzACVIsopenicillin N synthase1.21.3.10.595
2bjsACVIsopenicillin N synthase1.21.3.10.569
2y6fM9FIsopenicillin N synthase1.21.3.10.563
1odnAPVIsopenicillin N synthase1.21.3.10.518