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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2iidFADL-amino-acid oxidase1.4.3.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2iidFADL-amino-acid oxidase1.4.3.21.000
1f8rFADL-amino-acid oxidase1.4.3.20.726
1reoFADL-amino-acid oxidase1.4.3.20.536
1tdnFADL-amino-acid oxidase1.4.3.20.529
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.526
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.522
1tdoFADL-amino-acid oxidase1.4.3.20.520
4i58FADCyclohexylamine Oxidase/0.495
1tdkFADL-amino-acid oxidase1.4.3.20.492
2yr5FADPhenylalanine 2-monooxygenase precursor1.13.12.90.491
3nn6FB06-hydroxy-L-nicotine oxidase/0.481
2b9wFADPutative aminooxidase/0.480
1up7NAD6-phospho-beta-glucosidase BglT3.2.1.860.472
2jb1FADL-amino acid oxidase/0.466
2y48FADLysine-specific histone demethylase 1A10.461
4ehtADP2-hydroxyisocaproyl-CoA dehydratase activator/0.459
3qj4FADRenalase/0.455
3up0D7SaceDAF-12/0.454
2b9xFADPutative aminooxidase/0.449
3jskAHZThiamine thiazole synthase/0.446
4tvbNADHomospermidine synthase2.5.1.440.444
2jb2FADL-amino acid oxidase/0.443
2is0I03Beta-secretase 13.4.23.460.441
1oc1ASVIsopenicillin N synthase1.21.3.10.440
3kybFADUDP-galactopyranose mutase5.4.99.90.440
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440