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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2hvdADPNucleoside diphosphate kinase A2.7.4.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2hvdADPNucleoside diphosphate kinase A2.7.4.61.000
3nguADPNucleoside diphosphate kinase/0.575
1zs6ADPNucleoside diphosphate kinase 32.7.4.60.562
1be4PCGNucleoside diphosphate kinase A 22.7.4.60.487
1nueGDPNucleoside diphosphate kinase B2.7.4.60.484
2hveADPNucleoside diphosphate kinase A2.7.4.60.458
1buxPPSNucleoside diphosphate kinase, cytosolic2.7.4.60.457
4hr2ADPNucleoside diphosphate kinase/0.454
3q8uADPNucleoside diphosphate kinase/0.452