scPDB - Distribution of Binding site Similarity values of 2hmy entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2hmy	SAM	Modification methylase HhaI	2.1.1.37

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2hmy	SAM	Modification methylase HhaI	2.1.1.37	1.000
1skm	SAH	Modification methylase HhaI	2.1.1.37	0.613
9mht	SAH	Modification methylase HhaI	2.1.1.37	0.599
7mht	SAH	Modification methylase HhaI	2.1.1.37	0.597
5mht	SAH	Modification methylase HhaI	2.1.1.37	0.591
8mht	SAH	Modification methylase HhaI	2.1.1.37	0.568
2uyh	SAH	Modification methylase HhaI	2.1.1.37	0.566
2i9k	SAH	Modification methylase HhaI	2.1.1.37	0.559
2zcj	SAH	Modification methylase HhaI	2.1.1.37	0.553
1fjx	SAH	Modification methylase HhaI	2.1.1.37	0.547
10mh	SAH	Modification methylase HhaI	2.1.1.37	0.543
2z6u	SAH	Modification methylase HhaI	2.1.1.37	0.543
1mht	SAH	Modification methylase HhaI	2.1.1.37	0.535
3mht	SAH	Modification methylase HhaI	2.1.1.37	0.525
2c7q	SAH	Modification methylase HhaI	2.1.1.37	0.520
4mht	SAH	Modification methylase HhaI	2.1.1.37	0.503
3pt9	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.494
3pt6	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.482
4wxx	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.473
3qv2	SAH	5-cytosine DNA methyltransferase	/	0.471
4h0n	SAH	Dnmt2	/	0.464
4dkj	SAH	Cytosine-specific methyltransferase	/	0.451
4ft4	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.445
4da4	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.443