Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2gqaFMNNADH:flavin oxidoreductase Sye1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2gqaFMNNADH:flavin oxidoreductase Sye1/1.000
4awtFMNNADH:flavin oxidoreductase Sye1/0.823
2gouFMNNADH:flavin oxidoreductase Sye1/0.635
4awsFMNNADH:flavin oxidoreductase Sye1/0.563
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.526
3p8iFMNPentaerythritol tetranitrate reductase/0.521
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/0.515
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.508
4tmbFMNOld yellow enzyme/0.503
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.498
1h50FMNPentaerythritol tetranitrate reductase/0.493
4jicFMNGTN Reductase/0.487
1h63FMNPentaerythritol tetranitrate reductase/0.481
1icsFMN12-oxophytodienoate reductase 11.3.1.420.481
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.480
1icqFMN12-oxophytodienoate reductase 11.3.1.420.479
3p82FMNPentaerythritol tetranitrate reductase/0.474
4m5pFMNNADPH dehydrogenase/0.474
1icpFMN12-oxophytodienoate reductase 11.3.1.420.469
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.468
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.466
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.465
3tjlFMNNADPH dehydrogenase/0.464
3p84FMNPentaerythritol tetranitrate reductase/0.463
3f03FMNPentaerythritol tetranitrate reductase/0.461
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.458
2abbFMNPentaerythritol tetranitrate reductase/0.456
3p74FMNPentaerythritol tetranitrate reductase/0.456
3n19FNRXenobiotic reductase/0.453
3gkaFMNN-ethylmaleimide reductase/0.451
4h6kFMNNADPH dehydrogenase 11.6.99.10.451
4k7yFMNNADPH dehydrogenase 11.6.99.10.449
4rnwFMNNADPH dehydrogenase 11.6.99.10.449
1vyrFMNPentaerythritol tetranitrate reductase/0.443
1bwlFMNNADPH dehydrogenase 11.6.99.10.442
1k02FMNNADPH dehydrogenase 11.6.99.10.441
3p8jFMNPentaerythritol tetranitrate reductase/0.441
1z41FMNNADPH dehydrogenase/0.440