sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2gmu | PDG | Putative pyridoxamine 5-phosphate-dependent dehydrase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2gmu | PDG | Putative pyridoxamine 5-phosphate-dependent dehydrase | / | 1.000 | |
| 2gms | P0P | Putative pyridoxamine 5-phosphate-dependent dehydrase | / | 0.656 | |
| 3b8x | G4M | Putative pyridoxamine 5-phosphate-dependent dehydrase | / | 0.540 | |
| 3dr4 | G4M | GDP-perosamine synthase | / | 0.484 | |
| 4rkd | KET | Aminotransferase | / | 0.472 | |
| 3dr7 | GPD | GDP-perosamine synthase | / | 0.470 | |
| 4b12 | C23 | Glycylpeptide N-tetradecanoyltransferase | / | 0.440 |