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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2gesCOKPantothenate kinase2.7.1.33

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2gesCOKPantothenate kinase2.7.1.331.000
2getCOKPantothenate kinase2.7.1.330.630
2geuCOKPantothenate kinase2.7.1.330.586
2zsdCOAPantothenate kinase2.7.1.330.559
4bfsZVSPantothenate kinase2.7.1.330.530
2gevCOKPantothenate kinase2.7.1.330.524
2zsaADPPantothenate kinase2.7.1.330.524
1esmCOAPantothenate kinase2.7.1.330.509
3aezGDPPantothenate kinase2.7.1.330.498
3af2ACPPantothenate kinase2.7.1.330.491
3af0GDPPantothenate kinase2.7.1.330.487
2zsbADPPantothenate kinase2.7.1.330.483
4bftZVTPantothenate kinase2.7.1.330.482
3af4GCPPantothenate kinase2.7.1.330.478
3af1GDPPantothenate kinase2.7.1.330.465
4bfvZVVPantothenate kinase2.7.1.330.457
4bfxZVXPantothenate kinase2.7.1.330.445
2zs9ADPPantothenate kinase2.7.1.330.444