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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2g82NADGlyceraldehyde-3-phosphate dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/1.000
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.639
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.630
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.621
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.619
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.619
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.618
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.593
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.591
1cerNADGlyceraldehyde-3-phosphate dehydrogenase/0.588
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.588
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.585
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.584
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.582
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.580
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.578
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.577
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.577
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.569
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.567
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.567
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.563
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.563
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.558
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.554
3qv1NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.549
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.548
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.543
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.540
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.539
3zdfNADGlyceraldehyde-3-phosphate dehydrogenase/0.532
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.521
1zemNADXylitol dehydrogenase/0.498
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.496
3qw2NADMyo-inositol-1-phosphate synthase (Ino1)/0.493
3qvxNADMyo-inositol-1-phosphate synthase (Ino1)/0.492
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.491
4xq9NADHomospermidine synthase2.5.1.440.489
4xqcNADHomospermidine synthase2.5.1.440.485
3qvtNAIMyo-inositol-1-phosphate synthase (Ino1)/0.483
4xrgNADHomospermidine synthase2.5.1.440.481
1t2dNADL-lactate dehydrogenase1.1.1.270.477
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.476
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.474
3ak4NADNADH-dependent quinuclidinone reductase/0.473
3wmxNADNAD dependent epimerase/dehydratase/0.473
4tvbNADHomospermidine synthase2.5.1.440.471
1p1hNADInositol-3-phosphate synthase5.5.1.40.470
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.470
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.468
1la2NADInositol-3-phosphate synthase5.5.1.40.468
2ebaFADPutative glutaryl-CoA dehydrogenase/0.468
4nd2A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.466
1c1dNAIPhenylalanine dehydrogenase/0.465
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.464
4plpNADHomospermidine synthase2.5.1.440.464
3cinNADMyo-inositol-1-phosphate synthase-related protein/0.463
1ie3NADMalate dehydrogenase/0.462
1rx0FADIsobutyryl-CoA dehydrogenase, mitochondrial1.3.990.462
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.459
2hsdNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.459
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.457
2g5cNADPrephenate dehydrogenase/0.457
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.457
4kb9G79Protease/0.457
4ykgNADAlkyl hydroperoxide reductase subunit F1.8.10.457
2aa3AP0L-lactate dehydrogenase/0.454
2v13C40Renin3.4.23.150.454
5lc1NADL-threonine 3-dehydrogenase/0.454
1p1iNADInositol-3-phosphate synthase5.5.1.40.453
2dteNAIGlucose 1-dehydrogenase related protein/0.453
5jscFADPutative acyl-CoA dehydrogenase/0.453
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.453
1e3sNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.452
2fn7NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.452
3nugNADPyridoxal 4-dehydrogenase1.1.1.1070.451
3pvzNADUDP-N-acetylglucosamine 4,6-dehydratase/0.450
5jlaNADPutative short-chain dehydrogenase/reductase/0.449
1sowNADL-lactate dehydrogenase1.1.1.270.446
4ajp88NL-lactate dehydrogenase A chain1.1.1.270.446
1vikBAYGag-Pol polyprotein/0.445
4cr8NADN-acylmannosamine 1-dehydrogenase1.1.1.2330.445
4nd4NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.445
2dvmNAD439aa long hypothetical malate oxidoreductase (NAD) [malic enzyme]/0.444
2hjrAPRMalate dehydrogenase, adjacent gene encodes predicted lactate dehydrogenase/0.444
2vojNADAlanine dehydrogenase1.4.1.10.444
1g1aNADdTDP-glucose 4,6-dehydratase/0.443
1iy8NADLevodione reductase/0.443
1s7gNADNAD-dependent protein deacylase 2/0.443
4irnFADAnaB/0.443
4j4bNAIUncharacterized protein/0.443
4jjiNADAlcohol dehydrogenase class-3/0.443
1h2bNAJNAD-dependent alcohol dehydrogenase/0.442
2rcyNAPPyrroline-5-carboxylate reductase/0.442
1b3rNADAdenosylhomocysteinase3.3.1.10.441
1yt9OISGag-Pol polyprotein/0.441
2ag5NAD3-hydroxybutyrate dehydrogenase type 2/0.441
2obyNAPQuinone oxidoreductase PIG310.441
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
5bsgNAPPyrroline-5-carboxylate reductase/0.441
1u7tTDT3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.440
3aw9NADNAD-dependent epimerase/dehydratase/0.440