Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2fpcSCGStrictosidine synthase4.3.3.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2fpcSCGStrictosidine synthase4.3.3.21.000
4iyg1HUStrictosidine synthase4.3.3.20.528
3vtcTK3Vitamin D3 receptor/0.466
3p99LNPLanosterol 14-alpha-demethylase/0.445
3sn6P0GBeta-2 adrenergic receptor/0.442