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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2fonFADAcyl-coenzyme A oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2fonFADAcyl-coenzyme A oxidase/1.000
2z1qFADAcyl-CoA dehydrogenase/0.487
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.467
3owaFADAcyl-CoA dehydrogenase/0.459
3nf4FADAcyl-CoA dehydrogenase domain-containing protein/0.457
5jscFADPutative acyl-CoA dehydrogenase/0.455
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.454
1t9gFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.453
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.448