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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2fjaFADAdenylylsulfate reductase, subunit A (AprA)

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2fjaFADAdenylylsulfate reductase, subunit A (AprA)/1.000
1jnzFADAdenylylsulfate reductase, subunit A (AprA)/0.781
1jnrFADAdenylylsulfate reductase, subunit A (AprA)/0.771
2fjdSFDAdenylylsulfate reductase, subunit A (AprA)/0.615
2fjbSFDAdenylylsulfate reductase, subunit A (AprA)/0.562
2fjeFADAdenylylsulfate reductase, subunit A (AprA)/0.552
2geuCOKPantothenate kinase2.7.1.330.471
4z26FADPutative GMC-type oxidoreductase R13510.469
2dw4FADLysine-specific histone demethylase 1A10.467
2rgoFADAlpha-Glycerophosphate Oxidase/0.464
4z24FADPutative GMC-type oxidoreductase R13510.461
2xveFADPutative flavin-containing monooxygenase/0.460
4qi7FADCellobiose dehydrogenase/0.459
3q44D50M1 family aminopeptidase3.4.110.458
1cf3FADGlucose oxidase1.1.3.40.457
4bb3KKAIsopenicillin N synthase1.21.3.10.457
1zq5E04Aldo-keto reductase family 1 member C3/0.455
2xlrFADPutative flavin-containing monooxygenase/0.455
4kx6FADFumarate reductase flavoprotein subunit1.3.5.40.454
2getCOKPantothenate kinase2.7.1.330.451
4at0FADPossible succinate dehydrogenase/0.451
4bfsZVSPantothenate kinase2.7.1.330.451
1xpqFADPolyamine oxidase FMS1/0.450
5dp2NAPCurF/0.450
3cndFADPolyamine oxidase FMS1/0.449
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.448
4gdpFADPolyamine oxidase FMS1/0.448
3bi2FADPolyamine oxidase FMS1/0.447
2o7oDXTTetracycline repressor protein class D/0.446
2vbpVB1Isopenicillin N synthase1.21.3.10.446
4echFADPolyamine oxidase FMS1/0.446
1hb1OCVIsopenicillin N synthase1.21.3.10.445
2vkeTACTetracycline repressor protein class D/0.445
2y6fM9FIsopenicillin N synthase1.21.3.10.445
2zsdCOAPantothenate kinase2.7.1.330.445
3u9fCLMChloramphenicol acetyltransferase2.3.1.280.445
4j7hTRHPCZA361.3/0.445
2xpwOTCTetracycline repressor protein class D/0.444
4a2aATPCell division protein FtsA/0.444
1ygkRRCPyridoxal kinase2.7.1.350.442
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.442
4gtv7TRGeranylgeranyl transferase type-2 subunit beta2.5.1.600.441
1knrFADL-aspartate oxidase1.4.3.160.440
2po7CHDFerrochelatase, mitochondrial4.99.1.10.440
2xviFADPutative flavin-containing monooxygenase/0.440