scPDB - Distribution of Binding site Similarity values of 2ekl entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2ekl	NAD	D-3-phosphoglycerate dehydrogenase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2ekl	NAD	D-3-phosphoglycerate dehydrogenase	/	1.000
1wwk	NAD	307aa long hypothetical phosphoglycerate dehydrogenase	/	0.497
4xcv	NDP	Probable hydroxyacid dehydrogenase protein	/	0.472
4c7k	NAP	Corticosteroid 11-beta-dehydrogenase isozyme 1	1.1.1.146	0.461
3oet	NAD	Erythronate-4-phosphate dehydrogenase	/	0.458
2pa3	NAI	D-3-phosphoglycerate dehydrogenase	1.1.1.95	0.455
2g76	NAD	D-3-phosphoglycerate dehydrogenase	1.1.1.95	0.448
3umv	FAD	Deoxyribodipyrimidine photo-lyase	4.1.99.3	0.441
4fj1	NAP	17beta-hydroxysteroid dehydrogenase	/	0.440