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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2e83FMNFMN-binding protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2e83FMNFMN-binding protein/1.000
3vy5FMNFMN-binding protein/0.699
3vy2FMNFMN-binding protein/0.680
3awhFMNFMN-binding protein/0.670
3a6rFMNFMN-binding protein/0.661
3a6qFMNFMN-binding protein/0.642
3amfFMNFMN-binding protein/0.638
1flmFMNFMN-binding protein/0.637
3a20FMNFMN-binding protein/0.574
1wlkFMNFMN-binding protein/0.554
1wliFMNFMN-binding protein/0.513
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.463
2nq8ZIDEnoyl-ACP reductase/0.463
1lf2R37Plasmepsin-23.4.23.390.461
1bil0IURenin3.4.23.150.454
1dgmADNAdenosine kinase2.7.1.200.454
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.454
1w6hTITPlasmepsin-23.4.23.390.449
2gjlFMNNitronate monooxygenase1.13.12.160.447
4q71FADBifunctional protein PutA/0.447
4o1mNADEnoyl-acyl carrier reductase/0.445
1f20FADNitric oxide synthase, brain1.14.13.390.444
3own3OXRenin3.4.23.150.443
3clsFADElectron transfer flavoprotein subunit alpha/0.440
3d84NDPDihydrofolate reductase1.5.1.30.440