Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2cndFADNitrate reductase [NADH]1.7.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2cndFADNitrate reductase [NADH]1.7.1.11.000
1cnfFADNitrate reductase [NADH]1.7.1.10.542
1i7pFADNADH-cytochrome b5 reductase 31.6.2.20.514
1umkFADNADH-cytochrome b5 reductase 31.6.2.20.510
1ndhFADNADH-cytochrome b5 reductase 31.6.2.20.502
1qx4FADNADH-cytochrome b5 reductase 31.6.2.20.495
1cneFADNitrate reductase [NADH]1.7.1.10.473
2eixFADNADH-cytochrome b5 reductase/0.464
2g1s4IGRenin3.4.23.150.460
2g226IGRenin3.4.23.150.458
1xe65FPPlasmepsin-23.4.23.390.453
1psa0ZLPepsin A3.4.23.10.446
1bim0QBRenin3.4.23.150.443
3wqmB29Diterpene synthase3.1.7.80.443
2g247IGRenin3.4.23.150.440