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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2ccu2D9Heat shock protein HSP 90-alpha

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2ccu2D9Heat shock protein HSP 90-alpha/1.000
2vci2GJHeat shock protein HSP 90-alpha/0.590
2wi5ZZ5Heat shock protein HSP 90-alpha/0.546
2bsmBSMHeat shock protein HSP 90-alpha/0.534
2yi66QMHeat shock protein HSP 90-alpha/0.529
2vcj2EQHeat shock protein HSP 90-alpha/0.519
2uwd2GGHeat shock protein HSP 90-alpha/0.509
1osfKOSHeat shock protein HSP 90-alpha/0.476
2wi1ZZ2Heat shock protein HSP 90-alpha/0.474
1yetGDMHeat shock protein HSP 90-alpha/0.473
2exlGDMEndoplasmin/0.470
3q5lKX2Heat shock protein 83-1/0.460
3omuIBDHeat shock protein 83/0.454
4jqlVJ6Heat shock protein HSP 90-alpha/0.450
4c34STUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.449
5d3qGDPDynamin-13.6.5.50.448
1yc34BCHeat shock protein HSP 90-alpha/0.444
3h3cP1EProtein-tyrosine kinase 2-beta2.7.10.20.444
2x8iX8ISerine/threonine-protein kinase Chk12.7.11.10.440