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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2c5eGDDGDP-mannose 3,5-epimerase5.1.3.18

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2c5eGDDGDP-mannose 3,5-epimerase5.1.3.181.000
4z63ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.453
5kgpACOPredicted acetyltransferase/0.452
1qrrUPGUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.448
4b8zGDPGDP-L-fucose synthase1.1.1.2710.448
4ful0VUPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
3cx4ADPGlycogen synthase2.4.1.210.443
1i24UPGUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.442
2c3qGTXGlutathione S-transferase theta-12.5.1.180.442
4bfzZVZPantothenate kinase2.7.1.330.441