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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2c31TZDOxalyl-CoA decarboxylase4.1.1.8

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2c31TZDOxalyl-CoA decarboxylase4.1.1.81.000
2ji9TPWOxalyl-CoA decarboxylase4.1.1.80.616
2ji6TPWOxalyl-CoA decarboxylase4.1.1.80.509
2ktdPUCProstaglandin-H2 D-isomerase5.3.99.20.456
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.450
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.448
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.448
4m83ERYOleandomycin glycosyltransferase2.4.10.442
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
2gjlFMNNitronate monooxygenase1.13.12.160.441
2ignFADPyranose 2-oxidase/0.441
3gw9VNILanosterol 14-alpha-demethylase/0.441
4nwzFADFAD-dependent pyridine nucleotide-disulfide oxidoreductase/0.441
2ifaFMNUncharacterized protein/0.440
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.440