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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2bu9HFVIsopenicillin N synthase1.21.3.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2bu9HFVIsopenicillin N synthase1.21.3.11.000
1uzwCDHIsopenicillin N synthase1.21.3.10.763
2vbdV10Isopenicillin N synthase1.21.3.10.727
2jb4A14Isopenicillin N synthase1.21.3.10.698
2y60M8FIsopenicillin N synthase1.21.3.10.689
1hb3SCVIsopenicillin N synthase1.21.3.10.687
1w06W05Isopenicillin N synthase1.21.3.10.676
2iviACWIsopenicillin N synthase1.21.3.10.670
3zoiM2WIsopenicillin N synthase1.21.3.10.669
1hb1OCVIsopenicillin N synthase1.21.3.10.667
1bk0ACVIsopenicillin N synthase1.21.3.10.642
3zkyWT4Isopenicillin N synthase1.21.3.10.622
4bb3KKAIsopenicillin N synthase1.21.3.10.618
1qiqACCIsopenicillin N synthase1.21.3.10.600
1qjfACSIsopenicillin N synthase1.21.3.10.597
2vbpVB1Isopenicillin N synthase1.21.3.10.590
1blzACVIsopenicillin N synthase1.21.3.10.578
1oc1ASVIsopenicillin N synthase1.21.3.10.574
2vcmM11Isopenicillin N synthase1.21.3.10.566
2bjsACVIsopenicillin N synthase1.21.3.10.542
2wo7ASVIsopenicillin N synthase1.21.3.10.537
2y6fM9FIsopenicillin N synthase1.21.3.10.516
1obnASVIsopenicillin N synthase1.21.3.10.512
1odnAPVIsopenicillin N synthase1.21.3.10.508
3zkuHCVIsopenicillin N synthase1.21.3.10.499