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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2bslFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2bslFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.11.000
1dorFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.669
2djxFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.632
4ef9FMNDihydroorotate dehydrogenase (fumarate)/0.621
4ef8FMNDihydroorotate dehydrogenase (fumarate)/0.620
2djlFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.619
1jueFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.616
3c3nFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.592
1jubFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.585
4wzhFMNDihydroorotate dehydrogenase (fumarate)/0.584
3gyeFMNDihydroorotate dehydrogenase (fumarate)/0.583
3oixFMNDihydroorotate dehydrogenase/0.550
3aezGDPPantothenate kinase2.7.1.330.475
2gesCOKPantothenate kinase2.7.1.330.467
2zsaADPPantothenate kinase2.7.1.330.466
1w6hTITPlasmepsin-23.4.23.390.464
3b03VNRIsopentenyl-diphosphate delta-isomerase/0.463
2gjlFMNNitronate monooxygenase1.13.12.160.460
2ifaFMNUncharacterized protein/0.456
1ep3FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit1.3.1.140.454
2hydADPPutative multidrug export ATP-binding/permease protein SAV18663.6.30.453
4xyeNADFormate dehydrogenase/0.453
2zrvFNRIsopentenyl-diphosphate delta-isomerase/0.451
5dp2NAPCurF/0.450
3vkjFNRIsopentenyl-diphosphate delta-isomerase/0.449
3zpoK0IHistone demethylase UTY1.14.110.449
2r6gATPMaltose/maltodextrin import ATP-binding protein MalK/0.447
3ivgFG5Pantothenate synthetase6.3.2.10.446
2iko7IGRenin3.4.23.150.445
2a5hSAML-lysine 2,3-aminomutase5.4.3.20.442
3isjA8DPantothenate synthetase6.3.2.10.441
4bftZVTPantothenate kinase2.7.1.330.440