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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2bi8FADUDP-galactopyranose mutase5.4.99.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2bi8FADUDP-galactopyranose mutase5.4.99.91.000
1wamFADUDP-galactopyranose mutase5.4.99.90.637
3kybFADUDP-galactopyranose mutase5.4.99.90.558
1nahNADUDP-glucose 4-epimerase5.1.3.20.460
4j2wFADKynurenine 3-monooxygenase/0.444
1egeFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.443
1i3lNADUDP-glucose 4-epimerase/0.443
4j31FADKynurenine 3-monooxygenase/0.443
3b70NAPEnoyl reductase LovC10.441