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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2b52D42Cyclin-dependent kinase 22.7.11.22

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2b52D42Cyclin-dependent kinase 22.7.11.221.000
3rpv26ZCyclin-dependent kinase 22.7.11.220.591
3rm618ZCyclin-dependent kinase 22.7.11.220.567
3s1h56ZCyclin-dependent kinase 22.7.11.220.566
3rjc06ZCyclin-dependent kinase 22.7.11.220.561
3ezvEZVCyclin-dependent kinase 22.7.11.220.560
3sqq99ZCyclin-dependent kinase 22.7.11.220.554
1g5sI17Cyclin-dependent kinase 22.7.11.220.548
3lfnA27Cyclin-dependent kinase 22.7.11.220.547
4acm7YGCyclin-dependent kinase 22.7.11.220.541
3rak03ZCyclin-dependent kinase 22.7.11.220.539
3r9dX6BCyclin-dependent kinase 22.7.11.220.536
1h1r6CPCyclin-dependent kinase 22.7.11.220.529
2c6o4SPCyclin-dependent kinase 22.7.11.220.528
3r7yZ04Cyclin-dependent kinase 22.7.11.220.528
4fkv61KCyclin-dependent kinase 22.7.11.220.527
3qu0X40Cyclin-dependent kinase 22.7.11.220.526
3rpo24ZCyclin-dependent kinase 22.7.11.220.524
2w05FRTCyclin-dependent kinase 22.7.11.220.523
1h1s4SPCyclin-dependent kinase 22.7.11.220.522
1ke7LS3Cyclin-dependent kinase 22.7.11.220.522
4erwSTUCyclin-dependent kinase 22.7.11.220.522
3pj8404Cyclin-dependent kinase 22.7.11.220.521
3rk909ZCyclin-dependent kinase 22.7.11.220.521
3r1sX73Cyclin-dependent kinase 22.7.11.220.520
1v1k3FPCyclin-dependent kinase 22.7.11.220.518
3qtrX36Cyclin-dependent kinase 22.7.11.220.517
3qtzX42Cyclin-dependent kinase 22.7.11.220.517
2r3lSCWCyclin-dependent kinase 22.7.11.220.516
2r64740Cyclin-dependent kinase 22.7.11.220.514
3r71X86Cyclin-dependent kinase 22.7.11.220.513
1y91CT9Cyclin-dependent kinase 22.7.11.220.510
1oguST8Cyclin-dependent kinase 22.7.11.220.509
2fvdLIACyclin-dependent kinase 22.7.11.220.508
1di8DTQCyclin-dependent kinase 22.7.11.220.507
1pxmCK5Cyclin-dependent kinase 22.7.11.220.507
4fkw62KCyclin-dependent kinase 22.7.11.220.506
3ddqRRCCyclin-dependent kinase 22.7.11.220.505
1oitHDTCyclin-dependent kinase 22.7.11.220.503
3rni21ZCyclin-dependent kinase 22.7.11.220.502
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.501
3ddpRC8Cyclin-dependent kinase 22.7.11.220.501
1oi9N20Cyclin-dependent kinase 22.7.11.220.500
1w8cN69Cyclin-dependent kinase 22.7.11.220.500
3r83Z14Cyclin-dependent kinase 22.7.11.220.500
3sw418KCyclin-dependent kinase 22.7.11.220.499
3r7uX96Cyclin-dependent kinase 22.7.11.220.498
2a4lRRCCyclin-dependent kinase 22.7.11.220.496
1w0xOLOCyclin-dependent kinase 22.7.11.220.495
3ral04ZCyclin-dependent kinase 22.7.11.220.495
2uznC96Cyclin-dependent kinase 22.7.11.220.494
2vv9IM9Cyclin-dependent kinase 22.7.11.220.494
1oiyN41Cyclin-dependent kinase 22.7.11.220.493
2b55D31Cyclin-dependent kinase 22.7.11.220.493
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.493
3r1yX76Cyclin-dependent kinase 22.7.11.220.493
3rkb12ZCyclin-dependent kinase 22.7.11.220.493
3sw719KCyclin-dependent kinase 22.7.11.220.493
1ke6LS2Cyclin-dependent kinase 22.7.11.220.491
1fvt106Cyclin-dependent kinase 22.7.11.220.490
3r9hZ67Cyclin-dependent kinase 22.7.11.220.490
1gih1PUCyclin-dependent kinase 22.7.11.220.489
1urwI1PCyclin-dependent kinase 22.7.11.220.488
1e9hINRCyclin-dependent kinase 22.7.11.220.487
3lfqA28Cyclin-dependent kinase 22.7.11.220.487
3qruX19Cyclin-dependent kinase 22.7.11.220.487
3r7iX9ICyclin-dependent kinase 22.7.11.220.487
3r8lZ30Cyclin-dependent kinase 22.7.11.220.487
2iw94SPCyclin-dependent kinase 22.7.11.220.486
2r3kSCQCyclin-dependent kinase 22.7.11.220.486
2w1hL0FCyclin-dependent kinase 22.7.11.220.486
3qtuX44Cyclin-dependent kinase 22.7.11.220.486
3qtxX43Cyclin-dependent kinase 22.7.11.220.486
3qzhX69Cyclin-dependent kinase 22.7.11.220.486
4fkq42KCyclin-dependent kinase 22.7.11.220.486
1aq1STUCyclin-dependent kinase 22.7.11.220.484
2vtsLZCCyclin-dependent kinase 22.7.11.220.484
4lyn1YGCyclin-dependent kinase 22.7.11.220.483
2r3jSCJCyclin-dependent kinase 22.7.11.220.482
3r8vZ62Cyclin-dependent kinase 22.7.11.220.482
3r9oZ71Cyclin-dependent kinase 22.7.11.220.482
3roy22ZCyclin-dependent kinase 22.7.11.220.482
2c6iDT1Cyclin-dependent kinase 22.7.11.220.481
3qqkX02Cyclin-dependent kinase 22.7.11.220.481
3qxpX64Cyclin-dependent kinase 22.7.11.220.481
3s2pPMUCyclin-dependent kinase 22.7.11.220.481
2vu3LZECyclin-dependent kinase 22.7.11.220.480
3r6xX84Cyclin-dependent kinase 22.7.11.220.480
3rk708ZCyclin-dependent kinase 22.7.11.220.480
4fkr45KCyclin-dependent kinase 22.7.11.220.479
1oiuN76Cyclin-dependent kinase 22.7.11.220.478
2a0cCK9Cyclin-dependent kinase 22.7.11.220.478
3r73X87Cyclin-dependent kinase 22.7.11.220.478
4eor4SPCyclin-dependent kinase 22.7.11.220.478
2r3p3SCCyclin-dependent kinase 22.7.11.220.476
3rk507ZCyclin-dependent kinase 22.7.11.220.476
1hckATPCyclin-dependent kinase 22.7.11.220.475
4eok4SPCyclin-dependent kinase 22.7.11.220.475
4eon1ROCyclin-dependent kinase 22.7.11.220.475
2btrU73Cyclin-dependent kinase 22.7.11.220.473
4ek816KCyclin-dependent kinase 22.7.11.220.472
4fko20KCyclin-dependent kinase 22.7.11.220.472
1ke9LS5Cyclin-dependent kinase 22.7.11.220.471
2iw84SPCyclin-dependent kinase 22.7.11.220.471
2uzoC62Cyclin-dependent kinase 22.7.11.220.470
3ezrEZRCyclin-dependent kinase 22.7.11.220.470
2xmyCDKCyclin-dependent kinase 22.7.11.220.468
1gii1PUCyclin-dependent kinase 22.7.11.220.466
1gij2PUCyclin-dependent kinase 22.7.11.220.466
1p2a5BNCyclin-dependent kinase 22.7.11.220.466
2duv371Cyclin-dependent kinase 22.7.11.220.466
3qwkX62Cyclin-dependent kinase 22.7.11.220.466
3qxoX65Cyclin-dependent kinase 22.7.11.220.466
3r7eX88Cyclin-dependent kinase 22.7.11.220.466
3rmf20ZCyclin-dependent kinase 22.7.11.220.466
4fks46KCyclin-dependent kinase 22.7.11.220.465
4fx360KCyclin-dependent kinase 22.7.11.220.465
1ykr628Cyclin-dependent kinase 22.7.11.220.464
3rm719ZCyclin-dependent kinase 22.7.11.220.464
3qzgX67Cyclin-dependent kinase 22.7.11.220.463
3r7vZ02Cyclin-dependent kinase 22.7.11.220.463
3ti1B49Cyclin-dependent kinase 22.7.11.220.463
2r3iSCFCyclin-dependent kinase 22.7.11.220.462
1h1q2A6Cyclin-dependent kinase 22.7.11.220.461
1pyePM1Cyclin-dependent kinase 22.7.11.220.461
1vyw292Cyclin-dependent kinase 22.7.11.220.461
3r1qX75Cyclin-dependent kinase 22.7.11.220.461
3s00Z60Cyclin-dependent kinase 22.7.11.220.461
4bcnT9NCyclin-dependent kinase 22.7.11.220.461
4bcpT3CCyclin-dependent kinase 22.7.11.220.461
4bgh3I6Cyclin-dependent kinase 22.7.11.220.460
1ke5LS1Cyclin-dependent kinase 22.7.11.220.459
1r78FMDCyclin-dependent kinase 22.7.11.220.458
2bhhRYUCyclin-dependent kinase 22.7.11.220.458
4kd11QKCyclin-dependent kinase 22.7.11.220.458
1vyzN5BCyclin-dependent kinase 22.7.11.220.457
3qrtX14Cyclin-dependent kinase 22.7.11.220.457
3qx2X63Cyclin-dependent kinase 22.7.11.220.457
3s0o50ZCyclin-dependent kinase 22.7.11.220.456
4ez30S0Cyclin-dependent kinase 22.7.11.220.456
2iw6QQ2Cyclin-dependent kinase 22.7.11.220.455
3qqfX07Cyclin-dependent kinase 22.7.11.220.455
3unk0BYCyclin-dependent kinase 22.7.11.220.453
1b38ATPCyclin-dependent kinase 22.7.11.220.452
2x1nX1NCyclin-dependent kinase 22.7.11.220.452
3r28XA0Cyclin-dependent kinase 22.7.11.220.452
3r8pZ46Cyclin-dependent kinase 22.7.11.220.452
3raiX85Cyclin-dependent kinase 22.7.11.220.452
1ckpPVBCyclin-dependent kinase 22.7.11.220.451
2vtjLZ4Cyclin-dependent kinase 22.7.11.220.451
3py0SU9Cyclin-dependent kinase 22.7.11.220.451
1oiqHDUCyclin-dependent kinase 22.7.11.220.450
2r3mSCXCyclin-dependent kinase 22.7.11.220.450
3v5l0G1Tyrosine-protein kinase ITK/TSK2.7.10.20.450
2w17I19Cyclin-dependent kinase 22.7.11.220.449
3uli1N3Cyclin-dependent kinase 22.7.11.220.449
1xjdSTUProtein kinase C theta type2.7.11.130.448
2w06FRVCyclin-dependent kinase 22.7.11.220.448
4gih0X5Non-receptor tyrosine-protein kinase TYK22.7.10.20.448
1eh4IC1Casein kinase I homolog 12.7.11.10.447
2c6kDT2Cyclin-dependent kinase 22.7.11.220.447
2xnbY8LCyclin-dependent kinase 22.7.11.220.447
3sheI85MAP kinase-activated protein kinase 32.7.11.10.446
3qwjX6ACyclin-dependent kinase 22.7.11.220.445
4qmpDKISerine/threonine-protein kinase 242.7.11.10.444
1ke8LS4Cyclin-dependent kinase 22.7.11.220.443
2btsU32Cyclin-dependent kinase 22.7.11.220.443
2c6tDT5Cyclin-dependent kinase 22.7.11.220.443
2vtiLZ3Cyclin-dependent kinase 22.7.11.220.441
3unj0BXCyclin-dependent kinase 22.7.11.220.441
4fki09KCyclin-dependent kinase 22.7.11.220.441
4fkt48KCyclin-dependent kinase 22.7.11.220.441
4oh4ANPProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.441
1pxkCK3Cyclin-dependent kinase 22.7.11.220.440