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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2azyCHDPhospholipase A2, major isoenzyme3.1.1.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2azyCHDPhospholipase A2, major isoenzyme3.1.1.41.000
2b00GCHPhospholipase A2, major isoenzyme3.1.1.40.647
2azzTCHPhospholipase A2, major isoenzyme3.1.1.40.613
2b03TUDPhospholipase A2, major isoenzyme3.1.1.40.517
2b01TUDPhospholipase A2, major isoenzyme3.1.1.40.497