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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2aylFLPProstaglandin G/H synthase 11.14.99.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2aylFLPProstaglandin G/H synthase 11.14.99.11.000
3n8wFLPProstaglandin G/H synthase 11.14.99.10.673
1eqhFLPProstaglandin G/H synthase 11.14.99.10.670
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.663
1eqgIBPProstaglandin G/H synthase 11.14.99.10.648
3mqe416Prostaglandin G/H synthase 21.14.99.10.629
3q7dNPXProstaglandin G/H synthase 21.14.99.10.629
3ntgD72Prostaglandin G/H synthase 21.14.99.10.625
3rr3FLRProstaglandin G/H synthase 21.14.99.10.620
3n8zFLPProstaglandin G/H synthase 11.14.99.10.606
1ht834CProstaglandin G/H synthase 11.14.99.10.604
3n8xNIMProstaglandin G/H synthase 11.14.99.10.600
4coxIMNProstaglandin G/H synthase 21.14.99.10.595
3pghFLPProstaglandin G/H synthase 21.14.99.10.592
1q4gBFLProstaglandin G/H synthase 11.14.99.10.587
4ph9IBPProstaglandin G/H synthase 21.14.99.10.587
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.586
3ln1CELProstaglandin G/H synthase 21.14.99.10.579
2oyuIMSProstaglandin G/H synthase 11.14.99.10.562
3ln052BProstaglandin G/H synthase 21.14.99.10.559
5ikrID8Prostaglandin G/H synthase 21.14.99.10.559
4rrxLURProstaglandin G/H synthase 21.14.99.10.544
6coxS58Prostaglandin G/H synthase 21.14.99.10.541
3kk6CELProstaglandin G/H synthase 11.14.99.10.525
4otyLURProstaglandin G/H synthase 21.14.99.10.511
5ikqJMSProstaglandin G/H synthase 21.14.99.10.507
3n8yDIFProstaglandin G/H synthase 11.14.99.10.499
4rrwLURProstaglandin G/H synthase 21.14.99.10.497
4rrzLURProstaglandin G/H synthase 21.14.99.10.497
3cwkREACellular retinoic acid-binding protein 2/0.491
4m10ICDProstaglandin G/H synthase 21.14.99.10.490
1iyzNDPProbable quinone oxidoreductase/0.488
4r20AERCytochrome P450 family 17 polypeptide 2/0.488
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.487
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.487
1ju6LYAThymidylate synthase2.1.1.450.486
3mnrSD1Heat shock protein HSP 90-alpha/0.478
1efvFADElectron transfer flavoprotein subunit alpha, mitochondrial/0.477
1ht5FL2Prostaglandin G/H synthase 11.14.99.10.477
1pxxDIFProstaglandin G/H synthase 21.14.99.10.476
4jqh1MFAlr2278 protein/0.476
1qiqACCIsopenicillin N synthase1.21.3.10.475
2jb4A14Isopenicillin N synthase1.21.3.10.475
3v5l0G1Tyrosine-protein kinase ITK/TSK2.7.10.20.475
4b7dQLECytochrome P450 monooxygenase PikC/0.475
1oc1ASVIsopenicillin N synthase1.21.3.10.474
3tdaPN0Cytochrome P450 2D6/0.474
3fl8RARDihydrofolate reductase/0.473
5iktTLFProstaglandin G/H synthase 21.14.99.10.473
1qzfCB3Bifunctional dihydrofolate reductase-thymidylate synthase/0.471
1wlvCOAPhenylacetic acid degradation protein PaaI/0.471
2zl9VDAVitamin D3 receptor/0.471
3vrvYSDVitamin D3 receptor/0.471
1cx2S58Prostaglandin G/H synthase 21.14.99.10.470
2vcmM11Isopenicillin N synthase1.21.3.10.470
3p3zP3ZPutative cytochrome P450/0.470
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.470
1uydPU8Heat shock protein HSP 90-alpha/0.469
2ibzSMACytochrome b/0.469
3nwq2NCGag-Pol polyprotein3.4.23.160.469
3stuDK3Methylketone synthase I/0.469
4eb4D16Thymidylate synthase2.1.1.450.469
1pnvTYDdTDP-epi-vancosaminyltransferase2.4.1.3110.468
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.468
4fhh0U3Vitamin D3 receptor A/0.468
2aibERGBeta-elicitin cinnamomin/0.466
3eej53RUncharacterized protein/0.466
1uyfPU1Heat shock protein HSP 90-alpha/0.465
4bb3KKAIsopenicillin N synthase1.21.3.10.465
1hb1OCVIsopenicillin N synthase1.21.3.10.464
2b365PPEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.464
3kpzZNEVitamin D3 receptor/0.464
4g48PZBMycocyclosin synthase1.14.21.90.464
1jujLYAThymidylate synthase2.1.1.450.463
4qe6JN3Bile acid receptor/0.463
2y60M8FIsopenicillin N synthase1.21.3.10.462
3qly55VUncharacterized protein/0.462
4jv81M1Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.462
5iqhGNPBifunctional AAC/APH2.3.10.462
5k2bZMAAdenosine receptor A2a/0.462
1fdwESTEstradiol 17-beta-dehydrogenase 11.1.1.620.461
2iviACWIsopenicillin N synthase1.21.3.10.461
2qa2FADPolyketide oxygenase CabE/0.461
2y6fM9FIsopenicillin N synthase1.21.3.10.461
1cqp803Integrin alpha-L/0.460
2prh238Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.460
4h9753SDihydrofolate reductase1.5.1.30.460
1bk0ACVIsopenicillin N synthase1.21.3.10.459
1efpFADElectron transfer flavoprotein subunit alpha/0.459
1ie8KH1Vitamin D3 receptor/0.459
1rx3MTXDihydrofolate reductase1.5.1.30.459
1uzwCDHIsopenicillin N synthase1.21.3.10.459
2ykeYKEHeat shock protein HSP 90-alpha/0.459
3qlwN22Dihydrofolate reductase1.5.1.30.459
4bb5HD2Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.459
1lriCLRBeta-elicitin cryptogein/0.458
3opdHIEHeat shock protein 83/0.458
3stv3HOMethylketone synthase I/0.458
1k6pXN3Gag-Pol polyprotein3.4.23.160.457
1xkdNAPIsocitrate dehydrogenase [NADP]/0.457
3lu7IPXSerum albumin/0.457
3td8D2RDihydrofolate reductase1.5.1.30.457
4iae1DXAlr2278 protein/0.457
1blzACVIsopenicillin N synthase1.21.3.10.456
2ydwWSHBromodomain-containing protein 2/0.456
3vruYS3Vitamin D3 receptor/0.456
3zkyWT4Isopenicillin N synthase1.21.3.10.456
1nvqUCNSerine/threonine-protein kinase Chk12.7.11.10.455
1qjfACSIsopenicillin N synthase1.21.3.10.455
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.455
2fziDH3Dihydrofolate reductase1.5.1.30.455
2oxtSAMGenome polyprotein/0.455
2yylFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.455
2zva1N1Tyrosine-protein kinase Lyn2.7.10.20.455
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.455
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.455
3q8xUD1Toxin zeta/0.455
3vtdTKDVitamin D3 receptor/0.455
4nb6444Nuclear receptor ROR-gamma/0.455
1db1VDXVitamin D3 receptor/0.454
1n83CLRNuclear receptor ROR-alpha/0.454
1p0hACOMycothiol acetyltransferase2.3.1.1890.454
2h55DZ8Heat shock protein HSP 90-alpha/0.454
2i4zDRHPeroxisome proliferator-activated receptor gamma/0.454
2q5g1FAPeroxisome proliferator-activated receptor delta/0.454
3vtcTK3Vitamin D3 receptor/0.454
3w5tLHPVitamin D3 receptor/0.454
4a4vYFDPeroxisome proliferator-activated receptor gamma/0.454
4eajATP5'-AMP-activated protein kinase subunit gamma-1/0.454
4j6dTESCytochrome P450 monooxygenase/0.454
1t0lNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.453
1w06W05Isopenicillin N synthase1.21.3.10.453
3hk1B64Fatty acid-binding protein, adipocyte/0.453
3v9v21LPeroxisome proliferator-activated receptor gamma/0.453
3zoiM2WIsopenicillin N synthase1.21.3.10.453
4ia3BIVVitamin D3 receptor A/0.453
4j6cSTRCytochrome P450 monooxygenase/0.453
4ktl1CQCytochrome P450/0.453
5dp2NAPCurF/0.453
1mjbACOHistone acetyltransferase ESA1/0.452
2cig1DGDihydrofolate reductase1.5.1.30.452
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.452
3h0sB38Acetyl-CoA carboxylase/0.452
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
4fhi0S4Vitamin D3 receptor A/0.452
4ia2BIVVitamin D3 receptor A/0.452
4jbtASDCytochrome P450 monooxygenase/0.452
1kyoSMACytochrome b/0.451
2c59NADGDP-mannose 3,5-epimerase5.1.3.180.451
2hrcCHDFerrochelatase, mitochondrial4.99.1.10.451
2vbpVB1Isopenicillin N synthase1.21.3.10.451
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.451
3o0iP54Heat shock protein HSP 90-alpha/0.451
3p99LNPLanosterol 14-alpha-demethylase/0.451
3qlhT27Gag-Pol polyprotein2.7.7.490.451
3tfq07MCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.451
3vt3VDXVitamin D3 receptor/0.451
3vweCOAAlpha-tubulin N-acetyltransferase 1/0.451
3wfjNAD2-dehydropantoate 2-reductase/0.451
4g1y0VOVitamin D3 receptor A/0.451
4kf1HT5Aryldialkylphosphatase3.1.8.10.451
4ktf1TMCytochrome P450/0.451
4lxhC1EAlpha/beta hydrolase fold/0.451
1fm9570Peroxisome proliferator-activated receptor gamma/0.450
1rk3VDXVitamin D3 receptor/0.450
2qo4CHDFatty acid-binding protein 10-A, liver basic/0.450
2x7hPFNProstaglandin reductase 310.450
4x5jFOLDihydrofolate reductase1.5.1.30.450
3reyXACAdenosine receptor A2a/0.450
1p44GEQEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.449
1so2666cGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.449
2cmvNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.449
2hb8MVDVitamin D3 receptor/0.449
3cxhSMACytochrome b/0.449
3is9AC7Gag-Pol polyprotein2.7.7.490.449
3vt45YIVitamin D3 receptor/0.449
4bwxAGSPAB-dependent poly(A)-specific ribonuclease subunit pan3/0.449
4ccrFADThioredoxin reductase/0.449
4ele31IDihydrofolate reductase/0.449
4j6bPLOCytochrome P450 monooxygenase/0.449
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.449
4xr9TMPCalS8/0.449
5k2aZMAAdenosine receptor A2a/0.449
1gufNDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial1.3.1.100.448
1hsgMK1Gag-Pol polyprotein/0.448
2ca0PXICytochrome P450 monooxygenase PikC/0.448
2nnhREACytochrome P450 2C8/0.448
2ooyATP5'-AMP-activated protein kinase subunit gamma/0.448
3ttjJBIMitogen-activated protein kinase 102.7.11.240.448
3vf60H6Glucokinase2.7.1.20.448
4fgrADPPhosphoribosylaminoimidazole-succinocarboxamide synthase6.3.2.60.448
4z61ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.448
1kb9SMACytochrome b/0.447
1kyzFERCaffeic acid 3-O-methyltransferase2.1.1.680.447
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.447
2pmdGNPTranslation initiation factor 2 subunit gamma/0.447
2w0bCMWLanosterol 14-alpha demethylase1.14.13.700.447
2wotZZGTGF-beta receptor type-12.7.11.300.447
3nxe2NCProtease/0.447
3uwlFOZThymidylate synthase/0.447
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
4ia7BIVVitamin D3 receptor A/0.447
4jlk1NODeoxycytidine kinase2.7.1.740.447
1pn3TYDdTDP-epi-vancosaminyltransferase2.4.1.3110.446
1rrmAPRLactaldehyde reductase1.1.1.770.446
1s19MC9Vitamin D3 receptor/0.446
1w78PD8Dihydrofolate synthase/folylpolyglutamate synthase6.3.2.120.446
2aazCB3Thymidylate synthase2.1.1.450.446
2wesFADTryptophan 5-halogenase/0.446
2ykiYKIHeat shock protein HSP 90-alpha/0.446
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.446
3cs8BRLPeroxisome proliferator-activated receptor gamma/0.446
3stw2TDMethylketone synthase I/0.446
3tqhNDPQuinone oxidoreductase/0.446
3w0jT08Vitamin D3 receptor/0.446
4a28ADPKinesin-like protein KIF11/0.446
4foxD16Thymidylate synthase ThyA/0.446
4g1d0VKVitamin D3 receptor A/0.446
4u9zCOAAlpha-tubulin N-acetyltransferase 1/0.446
4xuhSFIPeroxisome proliferator-activated receptor gamma/0.446
4z63ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.446
5l7dCLRSmoothened homolog/0.446
1juvNDPDihydrofolate reductase1.5.1.30.445
1zeoC01Peroxisome proliferator-activated receptor gamma/0.445
2a1uFADElectron transfer flavoprotein subunit alpha, mitochondrial/0.445
2c6hPXICytochrome P450 monooxygenase PikC/0.445
2excJNKMitogen-activated protein kinase 102.7.11.240.445
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.445
2j14GNIPeroxisome proliferator-activated receptor delta/0.445
3f1kNAPUncharacterized oxidoreductase YciK10.445
3inmNDPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.445
3jqpA2PFerredoxin--NADP reductase, apicoplast/0.445
3ncgBK1Calmodulin-domain protein kinase 1, putative/0.445
3tmz06XCytochrome P450 2B41.14.14.10.445
4a1zADPKinesin-like protein KIF11/0.445
4a2aATPCell division protein FtsA/0.445
4elf35IDihydrofolate reductase/0.445
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.445
5e8xSTUTGF-beta receptor type-12.7.11.300.445
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.444
1u3r338Estrogen receptor beta/0.444
1w2xRCPAcetyl-CoA carboxylase/0.444
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.444
2om9AJAPeroxisome proliferator-activated receptor gamma/0.444
3bqdDAYGlucocorticoid receptor/0.444
3mdvCL6Cholesterol 24-hydroxylase/0.444
4ezj0SCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
4h9506UDihydrofolate reductase1.5.1.30.444
4i3wNADAldehyde dehydrogenase (NAD+)/0.444
4klaCHDFerrochelatase, mitochondrial4.99.1.10.444
4nmdFDABifunctional protein PutA/0.444
4nxwADPMitochondrial dynamics protein MID51/0.444
1e90MYCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
1ezvSMACytochrome b/0.443
1fdsESTEstradiol 17-beta-dehydrogenase 11.1.1.620.443
1hb3SCVIsopenicillin N synthase1.21.3.10.443
1kzuRG1Light-harvesting protein B-800/850 alpha chain/0.443
1kzuRG1Light-harvesting protein B-800/850 beta chain/0.443
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.443
1u0hONMAdenylate cyclase type 2/0.443
1u0hONMAdenylate cyclase type 5/0.443
1wsvTHHAminomethyltransferase, mitochondrial/0.443
2b0m201Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.443
2bu9HFVIsopenicillin N synthase1.21.3.10.443
2fwyH64Heat shock protein HSP 90-alpha/0.443
2hc4VDXVitamin D3 receptor A/0.443
2qfxNDPIsocitrate dehydrogenase [NADP], mitochondrial1.1.1.420.443
2qhm7CSSerine/threonine-protein kinase Chk12.7.11.10.443
2v1aFMNNPH1-1/0.443
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.443
3w5p4OAVitamin D3 receptor/0.443
4a9mP9MBromodomain-containing protein 2/0.443
4dymIYZActivin receptor type-12.7.11.300.443
4ez72ANCyclin-dependent kinase 22.7.11.220.443
4g7gVFVLanosterol 14-alpha-demethylase/0.443
4nc3ERM5-hydroxytryptamine receptor 2B/0.443
4xzmNAPAldo-keto reductase family 1 member B101.1.10.443
4z07PCGcGMP-dependent protein kinase 12.7.11.120.443
1dkfBMSRetinoic acid receptor alpha/0.442
1fmlRTLRetinol dehydratase/0.442
1hf3NADAlcohol dehydrogenase E chain1.1.1.10.442
1ppjANYCytochrome b/0.442
1pr9NAPL-xylulose reductase1.1.1.100.442
1rd4L08Integrin alpha-L/0.442
2bx8AZQSerum albumin/0.442
2i0zFADNAD(FAD)-utilizing dehydrogenases/0.442
2p15EZTEstrogen receptor/0.442
2vnaNAPProstaglandin reductase 21.3.1.480.442
2wleCOAPolysialic acid O-acetyltransferase/0.442
3a1nNADNDP-sugar epimerase/0.442
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.442
3lfcZ86Mitogen-activated protein kinase 14/0.442
3vt9YI4Vitamin D3 receptor/0.442
3w0gW07Vitamin D3 receptor/0.442
4ddrMMVDihydrofolate reductase1.5.1.30.442
4elh53IDihydrofolate reductase/0.442
4g210VPVitamin D3 receptor A/0.442
4ia1BIVVitamin D3 receptor A/0.442
4x2dATPFic family protein putative filamentation induced by cAMP protein/0.442
4y9lFADAcyl-CoA dehydrogenase family member 11/0.442
5k2cZMAAdenosine receptor A2a/0.442
5uviZMAAdenosine receptor A2a/0.442
1diuBDMDihydrofolate reductase1.5.1.30.441
1fmjRTLRetinol dehydratase/0.441
1jvsNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase1.1.1.2670.441
1msmJE2Gag-Pol polyprotein3.4.23.160.441
1zhzERGOxysterol-binding protein homolog 4/0.441
2e9cB75Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.441
2g78REACellular retinoic acid-binding protein 2/0.441
2hfpNSIPeroxisome proliferator-activated receptor gamma/0.441
2lbaCHOFatty acid binding protein 6/0.441
2o4jVD4Vitamin D3 receptor/0.441
2ydvNECAdenosine receptor A2a/0.441
3oiaA31Camphor 5-monooxygenase1.14.15.10.441
3sdkP3NProteasome subunit beta type-53.4.25.10.441
3sdkP3NProteasome subunit beta type-63.4.25.10.441
3zokNAD3-dehydroquinate synthase, chloroplastic4.2.3.40.441
4b1fKRHGlutamate racemase/0.441
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.441
4kba1QMCasein kinase I isoform delta2.7.11.10.441
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.441
5k2dZMAAdenosine receptor A2a/0.441
1i58ACPChemotaxis protein CheA2.7.13.30.440
1jutLYDThymidylate synthase/0.440
1kzjCB3Thymidylate synthase/0.440
1nyxDRFPeroxisome proliferator-activated receptor gamma/0.440
1sm2STUTyrosine-protein kinase ITK/TSK2.7.10.20.440
1uykPUXHeat shock protein HSP 90-alpha/0.440
1xuoLA1Integrin alpha-L/0.440
2ath3EAPeroxisome proliferator-activated receptor gamma/0.440
2qnqQN3Gag-Pol polyprotein3.4.23.160.440
2zb1GK4Mitogen-activated protein kinase 14/0.440
3a1l2CCCytochrome P450/0.440
3gy0NAPNAD(P)-dependent oxidoreductase/0.440
3p3e3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.440
3vt5YI2Vitamin D3 receptor/0.440
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.440
4dscA8SAbscisic acid receptor PYL3/0.440
4elg52JDihydrofolate reductase/0.440
4fsrHKCSerine/threonine-protein kinase Chk12.7.11.10.440
4iaq2GM5-hydroxytryptamine receptor 1B/0.440
4iui1GQEstrogen receptor/0.440
4zs2FLUAlpha-ketoglutarate-dependent dioxygenase FTO/0.440
5jtbZMAAdenosine receptor A2a/0.440