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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2abbFMNPentaerythritol tetranitrate reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2abbFMNPentaerythritol tetranitrate reductase/1.000
3p74FMNPentaerythritol tetranitrate reductase/0.783
3p62FMNPentaerythritol tetranitrate reductase/0.666
1h63FMNPentaerythritol tetranitrate reductase/0.636
1vyrFMNPentaerythritol tetranitrate reductase/0.635
1h50FMNPentaerythritol tetranitrate reductase/0.624
3f03FMNPentaerythritol tetranitrate reductase/0.616
1h51FMNPentaerythritol tetranitrate reductase/0.587
3p8jFMNPentaerythritol tetranitrate reductase/0.572
3p84FMNPentaerythritol tetranitrate reductase/0.555
3p8iFMNPentaerythritol tetranitrate reductase/0.552
3p82FMNPentaerythritol tetranitrate reductase/0.541
3p67FMNPentaerythritol tetranitrate reductase/0.534
1icqFMN12-oxophytodienoate reductase 11.3.1.420.528
1icpFMN12-oxophytodienoate reductase 11.3.1.420.526
4jicFMNGTN Reductase/0.521
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.518
1icsFMN12-oxophytodienoate reductase 11.3.1.420.511
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.504
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.504
3gkaFMNN-ethylmaleimide reductase/0.500
4tmbFMNOld yellow enzyme/0.499
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.498
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.497
1q45FMN12-oxophytodienoate reductase 31.3.1.420.480
1bwkFMNNADPH dehydrogenase 11.6.99.10.479
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.477
4rnvFMNNADPH dehydrogenase 11.6.99.10.475
1oyaFMNNADPH dehydrogenase 11.6.99.10.472
1oycFMNNADPH dehydrogenase 11.6.99.10.472
4e2bFMNDehydrogenase/0.467
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.464
4df2FMNNADPH dehydrogenase/0.462
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.459
4e2dFMNDehydrogenase/0.459
4h6kFMNNADPH dehydrogenase 11.6.99.10.459
3tjlFMNNADPH dehydrogenase/0.457
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.456
4m5pFMNNADPH dehydrogenase/0.456
4rnuFMNNADPH dehydrogenase 11.6.99.10.456
3atzFMNProstaglandin F2a synthase/0.455
1bwlFMNNADPH dehydrogenase 11.6.99.10.444
4awtFMNNADH:flavin oxidoreductase Sye1/0.440