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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1z8962PAldose reductase1.1.1.21

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1z8962PAldose reductase1.1.1.211.000
2pdmZSTAldose reductase1.1.1.210.801
2iki388Aldose reductase1.1.1.210.783
1t40ID5Aldose reductase1.1.1.210.766
2ikj393Aldose reductase1.1.1.210.766
2fz9ZSTAldose reductase1.1.1.210.709
2fz8ZSTAldose reductase1.1.1.210.703
2dv0ZSTAldose reductase1.1.1.210.690
2qxwLDTAldose reductase1.1.1.210.680
3lboLDTAldose reductase1.1.1.210.680
2ikhLITAldose reductase1.1.1.210.674
3lqlLDTAldose reductase1.1.1.210.670
1t41ID5Aldose reductase1.1.1.210.667
1z3n3NAAldose reductase1.1.1.210.663
2pdxZSTAldose reductase1.1.1.210.656
2hv5ZSTAldose reductase1.1.1.210.653
4gca2X9Aldose reductase1.1.1.210.651
3m4h388Aldose reductase1.1.1.210.647
3m64393Aldose reductase1.1.1.210.637
2i16LDTAldose reductase1.1.1.210.629
2pdg47DAldose reductase1.1.1.210.624
2duzZSTAldose reductase1.1.1.210.623
2hvnZSTAldose reductase1.1.1.210.617
1pwlBFIAldose reductase1.1.1.210.612
3ghrLDTAldose reductase1.1.1.210.612
3mb9ZSTAldose reductase1.1.1.210.612
2pd5ZSTAldose reductase1.1.1.210.611
3lz5LDTAldose reductase1.1.1.210.610
2pdiZSTAldose reductase1.1.1.210.609
2pdp393Aldose reductase1.1.1.210.607
3t423T4Aldose reductase1.1.1.210.603
3ld5LDTAldose reductase1.1.1.210.601
2pdh47DAldose reductase1.1.1.210.598
2pdbZSTAldose reductase1.1.1.210.595
4yu153NAldose reductase1.1.1.210.595
2pdfZSTAldose reductase1.1.1.210.594
2pdn47DAldose reductase1.1.1.210.593
2pdc393Aldose reductase1.1.1.210.592
2duxZSTAldose reductase1.1.1.210.591
3lenZSTAldose reductase1.1.1.210.591
3g5eQ74Aldose reductase1.1.1.210.590
2pdu393Aldose reductase1.1.1.210.589
2i17LDTAldose reductase1.1.1.210.587
3m0iZSTAldose reductase1.1.1.210.582
3ghtLDTAldose reductase1.1.1.210.578
1ieiZESAldose reductase1.1.1.210.573
3ghuLDTAldose reductase1.1.1.210.572
2pzn393Aldose reductase1.1.1.210.571
3mc5393Aldose reductase1.1.1.210.571
3ghsLDTAldose reductase1.1.1.210.570
2agtFIDAldose reductase1.1.1.210.561
2pdlTOLAldose reductase1.1.1.210.556
1us0LDTAldose reductase1.1.1.210.555
1frbZSTAldose reductase-related protein 2/0.553
2pdj393Aldose reductase1.1.1.210.547
2fzdTOLAldose reductase1.1.1.210.545
1ah3TOLAldose reductase1.1.1.210.530
2pdq47DAldose reductase1.1.1.210.524
2hvoZSTAldose reductase1.1.1.210.523
2pdwFIDAldose reductase1.1.1.210.516
2bfmTOPPteridine reductase 11.5.1.330.511
1zuaTOLAldo-keto reductase family 1 member B101.1.10.508
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.506
4pnmNU1Tankyrase-22.4.2.300.506
3k4s0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.500
1zklIBMHigh affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A3.1.4.530.499
4lsaBLDProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.498
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.496
3f3y4OABile salt sulfotransferase2.8.2.140.494
4xwtU5PRibonuclease J/0.491
1oynROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.489
4u163C0Muscarinic acetylcholine receptor M3/0.487
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.486
2oazI96Methionine aminopeptidase 2/0.486
2f3815MAldo-keto reductase family 1 member C3/0.485
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.484
1zknIBMcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.480
2aovC2MHistamine N-methyltransferase2.1.1.80.480
3af0GDPPantothenate kinase2.7.1.330.480
1p91SAM23S rRNA (guanine(745)-N(1))-methyltransferase/0.479
1xf0ASDAldo-keto reductase family 1 member C3/0.479
1umcTDP2-oxoisovalerate dehydrogenase subunit alpha1.2.4.40.478
1umcTDP2-oxoisovalerate dehydrogenase subunit beta1.2.4.40.478
1yw7A41Methionine aminopeptidase 2/0.478
4zzi1NSNAD-dependent protein deacetylase sirtuin-13.5.10.477
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.476
1ro6ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.476
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.475
2ipiAKYAclacinomycin-N/aclacinomycin-A oxidase/0.475
4phlPILPhosphodiesterase/0.475
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.474
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.474
2c1zKMPAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.473
4dbs0HVAldo-keto reductase family 1 member C3/0.473
1rxjBNIStreptavidin/0.471
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.471
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.470
2zsbADPPantothenate kinase2.7.1.330.470
3akn11DFatty acid-binding protein, intestinal/0.470
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.470
4kp61S1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.470
5fd8A5APutative carboxypeptidase yocD/0.470
3zecANPAdenosine monophosphate-protein transferase SoFic2.7.7.n10.469
5liu388Aldo-keto reductase family 1 member B101.1.10.469
2cbqTH2Neocarzinostatin/0.468
4e0u0MVCyclic dipeptide N-prenyltransferase/0.468
1y2e5DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.467
3af1GDPPantothenate kinase2.7.1.330.467
1pj7FFODimethylglycine oxidase1.5.3.100.466
2ea4F79Methionine aminopeptidase 2/0.466
2f2kTGGAldose reductase1.1.1.210.466
2iqdLPAAldose reductase1.1.1.210.466
2qimZEAClass 10 plant pathogenesis-related protein/0.466
2xuhTZ4Acetylcholinesterase3.1.1.70.466
1fmlRTLRetinol dehydratase/0.465
1hb1OCVIsopenicillin N synthase1.21.3.10.465
1lnmDTXBilin-binding protein/0.465
1ry0PG2Aldo-keto reductase family 1 member C3/0.465
1uk0FRMPoly [ADP-ribose] polymerase 12.4.2.300.465
2fm0M98cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.464
4jt81NRNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.464
1blzACVIsopenicillin N synthase1.21.3.10.463
3q9bB3NAcetylpolyamine amidohydrolase/0.463
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.463
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.463
2fzbTOLAldose reductase1.1.1.210.462
2vq7FADPutative flavin-containing monooxygenase/0.462
2zsaADPPantothenate kinase2.7.1.330.462
3a1l2CCCytochrome P450/0.462
1y2k7DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.461
2y6fM9FIsopenicillin N synthase1.21.3.10.461
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.461
3g493G4Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.461
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.461
4psbGA3Cytokinin-specific binding protein/0.461
4tvj09LPoly [ADP-ribose] polymerase 22.4.2.300.461
1hb3SCVIsopenicillin N synthase1.21.3.10.460
2getCOKPantothenate kinase2.7.1.330.460
3o57ZG2cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.460
3vf60H6Glucokinase2.7.1.20.460
4fam0SZAldo-keto reductase family 1 member C3/0.460
1c7oPPGHemolysin/0.459
1x8lOXRRetinol dehydratase/0.459
2zsdCOAPantothenate kinase2.7.1.330.459
3burTES3-oxo-5-beta-steroid 4-dehydrogenase/0.459
3g4gD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.459
3hiiPNTAmiloride-sensitive amine oxidase [copper-containing]/0.459
3tfuPL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase2.6.1.620.459
4f0rMTA5-methylthioadenosine/S-adenosylhomocysteine deaminase/0.459
1ry8RUTAldo-keto reductase family 1 member C3/0.458
2ga2A19Methionine aminopeptidase 2/0.458
2jb4A14Isopenicillin N synthase1.21.3.10.458
2vqqTFGHistone deacetylase 43.5.1.980.458
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.458
4dk70KSOxysterols receptor LXR-beta/0.458
4jq3ZOMAldo-keto reductase family 1 member C2/0.458
1xonPILcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.457
2pdkSBIAldose reductase1.1.1.210.457
3zkuHCVIsopenicillin N synthase1.21.3.10.457
4kmzFOLFolate receptor beta/0.457
1rvvINI6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.456
2w6cBM4Acetylcholinesterase3.1.1.70.456
3u5ySCGRaucaffricine-O-beta-D-glucosidase3.2.1.1250.456
4b7zQ4QAcetylcholinesterase3.1.1.70.456
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.456
4kn2LYAFolate receptor beta/0.456
2y60M8FIsopenicillin N synthase1.21.3.10.455
3ghvGHCDihydrofolate reductase1.5.1.30.455
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.455
3r8hZOMAldo-keto reductase family 1 member C3/0.455
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.455
4c1iEH9cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.455
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.455
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.455
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.454
2cekN8TAcetylcholinesterase3.1.1.70.454
2xuqTZ4Acetylcholinesterase3.1.1.70.454
3c72CX1Geranylgeranyl transferase type-2 subunit beta2.5.1.600.454
3r43ID8Aldo-keto reductase family 1 member C3/0.454
4ia05BBcGMP-specific 3',5'-cyclic phosphodiesterase/0.454
4wevSUZAldo-keto reductase family 1 member B101.1.10.454
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.453
1obnASVIsopenicillin N synthase1.21.3.10.453
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.453
3rj0BLDProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.453
1el3I84Aldose reductase1.1.1.210.452
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.452
1zgbA1EAcetylcholinesterase3.1.1.70.452
1zisINI6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.452
2pd9FIDAldose reductase1.1.1.210.452
3b82NADExotoxin A2.4.2.360.452
3iakEV1cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.452
4ey7E20Acetylcholinesterase3.1.1.70.452
4jsr1NQNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.452
4jt91NSNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.452
4pnrG18Tankyrase-22.4.2.300.452
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.451
1p8dCO1Oxysterols receptor LXR-beta/0.451
2gesCOKPantothenate kinase2.7.1.330.451
2v0mKLNCytochrome P450 3A4/0.451
3aezGDPPantothenate kinase2.7.1.330.451
3tfjTHGDimethylsulfonioproprionate demethylase DmdA2.1.1.2690.451
4dvi2IWTankyrase-12.4.2.300.451
4fcb0T7cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.451
1h22E10Acetylcholinesterase3.1.1.70.450
1sojIBMcGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.450
1w06W05Isopenicillin N synthase1.21.3.10.450
2tplHPPTyrosine phenol-lyase4.1.99.20.450
2zu9GDPMannosyl-3-phosphoglycerate synthase2.4.1.2170.450
3sni546cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.450
4b65NDPL-ornithine N(5)-monooxygenase/0.450
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.450
4li61XOTankyrase-12.4.2.300.450
4n3l2FNProthrombin3.4.21.50.450
5a4wQCTGlutathione S-transferase F22.5.1.180.450
1ihiIU5Aldo-keto reductase family 1 member C2/0.449
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.449
1qiqACCIsopenicillin N synthase1.21.3.10.449
2inzOHPAldose reductase1.1.1.210.449
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.449
3hxeBD8Geranylgeranyl transferase type-2 subunit beta2.5.1.600.449
3n0hTOPDihydrofolate reductase1.5.1.30.449
3uzxAOX3-oxo-5-beta-steroid 4-dehydrogenase/0.449
3zkyWT4Isopenicillin N synthase1.21.3.10.449
4jtqFLPAldo-keto reductase family 1 member C2/0.449
1enoNADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic1.3.1.90.448
1zgcA2EAcetylcholinesterase3.1.1.70.448
2geuCOKPantothenate kinase2.7.1.330.448
2gvcFADThiol-specific monooxygenase1.14.130.448
3b8xG4MPutative pyridoxamine 5-phosphate-dependent dehydrase/0.448
3uzxAOM3-oxo-5-beta-steroid 4-dehydrogenase/0.448
4dbw511Aldo-keto reductase family 1 member C3/0.448
4heu15JcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.448
4muw2F4cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.448
4myq19TcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.448
1aquESTEstrogen sulfotransferase, testis isoform2.8.2.40.447
1dlsMTXDihydrofolate reductase1.5.1.30.447
1odcA8BAcetylcholinesterase3.1.1.70.447
1pqc444Oxysterols receptor LXR-beta/0.447
1w4lGL8Acetylcholinesterase3.1.1.70.447
2aot2PMHistamine N-methyltransferase2.1.1.80.447
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.447
2xejOKDGlutamate carboxypeptidase 23.4.17.210.447
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
3jsxCC2NAD(P)H dehydrogenase [quinone] 11.6.5.20.447
3pn1IVHDNA ligase/0.447
3wavDWVEctonucleotide pyrophosphatase/phosphodiesterase family member 23.1.4.390.447
4drhRAPSerine/threonine-protein kinase mTOR2.7.11.10.447
4drhRAPPeptidyl-prolyl cis-trans isomerase FKBP55.2.1.80.447
1p0pBCHCholinesterase3.1.1.80.446
1s36CEIObelin/0.446
1yhjR6CPyridoxal kinase2.7.1.350.446
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.446
2fpcSCGStrictosidine synthase4.3.3.20.446
2vbpVB1Isopenicillin N synthase1.21.3.10.446
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.446
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.446
4bftZVTPantothenate kinase2.7.1.330.446
4dbuBT9Aldo-keto reductase family 1 member C3/0.446
1q84TZ4Acetylcholinesterase3.1.1.70.445
2a59LMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.445
2aj4ANPGalactokinase2.7.1.60.445
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.445
3g4lROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
4gi2NAPCrotonyl-CoA carboxylase/reductase/0.445
4gts7TPGeranylgeranyl transferase type-2 subunit beta2.5.1.600.445
4h7c10HAldo-keto reductase family 1 member C3/0.445
1esmCOAPantothenate kinase2.7.1.330.444
2fhjH4ZFormylmethanofuran--tetrahydromethanopterin formyltransferase2.3.1.1010.444
3g4kROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
3jsiWTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.444
3zoiM2WIsopenicillin N synthase1.21.3.10.444
4i9i1DYTankyrase-12.4.2.300.444
4jvnYUGEstrogen sulfotransferase2.8.2.40.444
4mv1ADPBiotin carboxylase6.3.4.140.444
4n4v2GYTankyrase-12.4.2.300.444
4paaTHGDimethylglycine dehydrogenase, mitochondrial1.5.8.40.444
1r58AO5Methionine aminopeptidase 2/0.443
1uk1FRQPoly [ADP-ribose] polymerase 12.4.2.300.443
2hzqSTRApolipoprotein D/0.443
3c3xNAPEugenol synthase 11.1.1.3180.443
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
3klbFMNUncharacterized protein/0.443
3x025GPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.443
4l6s1WQPoly [ADP-ribose] polymerase 12.4.2.300.443
4nqgCZHMitrocomin/0.443
4yfy0FXVioF/0.443
4u140HKMuscarinic acetylcholine receptor M3/0.443
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.442
1ndzFR5Adenosine deaminase3.5.4.40.442
1tcoFK5Peptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.442
1tcoFK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform3.1.3.160.442
2vqbFADPutative flavin-containing monooxygenase/0.442
3hmvHBTcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.442
3lz6A0DCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.442
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.442
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.442
4fapARDPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.442
4fapARDSerine/threonine-protein kinase mTOR2.7.11.10.442
4mm729JNa(+):neurotransmitter symporter (Snf family)/0.442
1zq5E04Aldo-keto reductase family 1 member C3/0.441
2c9zQUEAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.441
2ok7A2PFerredoxin--NADP reductase, apicoplast/0.441
2xupTZ5Acetylcholinesterase3.1.1.70.441
3dopNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.441
3f0aACOSpermidine N(1)-acetyltransferase/0.441
3nubUD0UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase2.6.1.980.441
3qpnPFKcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
3tfq07MCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441
3u57DH8Raucaffricine-O-beta-D-glucosidase3.2.1.1250.441
3u8hBHPPhospholipase A2, membrane associated/0.441
3x04GNPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.441
4araC56Acetylcholinesterase3.1.1.70.441
4gv08MEPoly [ADP-ribose] polymerase 32.4.2.300.441
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.441
3sn6P0GBeta-2 adrenergic receptor/0.441
2pdyFIDAldose reductase1.1.1.210.440
2q153MRBeta-secretase 13.4.23.460.440
2vcmM11Isopenicillin N synthase1.21.3.10.440
2xegCI9Glutamate carboxypeptidase 23.4.17.210.440
3g72A6TRenin3.4.23.150.440
3pqbVGPPutative oxidoreductase/0.440
3qe2FMNNADPH--cytochrome P450 reductase/0.440
4bj9UHBTankyrase-22.4.2.300.440
4mt92D6Tankyrase-12.4.2.300.440
4stdBFSScytalone dehydratase4.2.1.940.440