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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1z4uPH9Polyprotein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1z4uPH9Polyprotein/1.000
3bsa1PDGenome polyprotein2.7.7.480.611
3d5m4MSGenome polyprotein2.7.7.480.595
3upi0C2Genome polyprotein2.7.7.480.592
1yvfPH7Polyprotein/0.591
3gnwXNCGenome polyprotein2.7.7.480.591
2gc8885Polyprotein/0.588
3ska053Genome polyprotein2.7.7.480.583
3h59H59Genome polyprotein2.7.7.480.579
3h5uH5UGenome polyprotein2.7.7.480.572
3u4o08EGenome polyprotein2.7.7.480.572
4ih61EPGenome polyprotein2.7.7.480.570
4mk728OGenome polyprotein2.7.7.480.564
4ih71ERGenome polyprotein2.7.7.480.563
3h5sH5SGenome polyprotein2.7.7.480.562
3ske054Genome polyprotein2.7.7.480.561
3cvkN34Genome polyprotein2.7.7.480.559
3uph0C1Genome polyprotein2.7.7.480.558
3hkyIX6Genome polyprotein2.7.7.480.555
4iz02BIGenome polyprotein2.7.7.480.552
3golXNDGenome polyprotein2.7.7.480.549
2fvc888Polyprotein/0.546
3csoXNIGenome polyprotein2.7.7.480.546
3gnvXNZGenome polyprotein2.7.7.480.546
3igvB80Genome polyprotein2.7.7.480.546
4mk828QGenome polyprotein2.7.7.480.546
3cwj321Genome polyprotein2.7.7.480.537
3e51N35Genome polyprotein2.7.7.480.535
3cdeN3HGenome polyprotein2.7.7.480.522
2yoj8Y6Genome polyprotein2.7.7.480.518
4mk928RGenome polyprotein2.7.7.480.514
3gynB42Genome polyprotein2.7.7.480.510
3co93MSGenome polyprotein2.7.7.480.501
3h98B5PGenome polyprotein2.7.7.480.488
2qe5617Polyprotein/0.464
1w6hTITPlasmepsin-23.4.23.390.455