sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1yqd | NAP | Sinapyl alcohol dehydrogenase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1yqd | NAP | Sinapyl alcohol dehydrogenase | / | 1.000 | |
| 1yqx | NAP | Sinapyl alcohol dehydrogenase | / | 0.623 | |
| 1h2b | NAJ | NAD-dependent alcohol dehydrogenase | / | 0.474 | |
| 4c4o | NAD | SADH | / | 0.469 | |
| 3uko | NAD | Alcohol dehydrogenase class-3 | / | 0.462 | |
| 4gkv | NAD | Alcohol dehydrogenase, propanol-preferring | 1.1.1.1 | 0.461 | |
| 3two | NDP | Mannitol dehydrogenase | / | 0.460 | |
| 1p0f | NAP | NADP-dependent alcohol dehydrogenase | 1.1.1.2 | 0.454 | |
| 5env | NAD | Alcohol dehydrogenase 1 | 1.1.1.1 | 0.452 | |
| 2xaa | NAD | Secondary alcohol dehydrogenase | / | 0.447 | |
| 1llu | NAD | Alcohol dehydrogenase | / | 0.440 |