scPDB - Distribution of Binding site Similarity values of 1yf3 entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1yf3	SAH	DNA adenine methylase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1yf3	SAH	DNA adenine methylase	/	1.000
4rtr	SAM	DNA adenine methylase	2.1.1.72	0.485
2ore	SAH	DNA adenine methylase	2.1.1.72	0.481
4rtl	SFG	DNA adenine methylase	2.1.1.72	0.481
4rtk	SAH	DNA adenine methylase	2.1.1.72	0.478
4gbe	SAH	DNA adenine methylase	2.1.1.72	0.474
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.469
3ldf	SAH	Uncharacterized protein	/	0.466
2dpm	SAM	Modification methylase DpnIIA	2.1.1.72	0.464
1nw5	SAM	Modification methylase RsrI	2.1.1.72	0.455
4obw	SAM	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial	/	0.455
3v97	SAH	Ribosomal RNA large subunit methyltransferase K/L	2.1.1.173	0.452
4dmg	SAM	Uncharacterized protein	/	0.452
3sso	SAH	Mycinamicin VI 2''-O-methyltransferase	/	0.450
3ou7	SAM	SAM-dependent methyltransferase	/	0.442
4j7h	TRH	PCZA361.3	/	0.441
4rtm	SAM	DNA adenine methylase	2.1.1.72	0.440