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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.291.000
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.624
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.589
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.587
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.570
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.565
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.564
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.549
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.539
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.531
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.524
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.290.513
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.507
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.507
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.493
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.492
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.463
4fgcPQ0NADPH-dependent 7-cyano-7-deazaguanine reductase1.7.1.130.462
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.455
4fvz4KJNitric oxide synthase, brain1.14.13.390.454
1rfqLARActin, alpha skeletal muscle/0.450
1u3cFADCryptochrome-1/0.446
4ug91EWNitric oxide synthase oxygenase1.14.13.1650.446
4ug71EVNitric oxide synthase oxygenase1.14.13.1650.443
3nmhPYVAbscisic acid receptor PYL2/0.442
4o4eATPKinase/0.442