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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1xudPB4Collagenase 33.4.24

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1xudPB4Collagenase 33.4.241.000
1xucPB3Collagenase 33.4.240.848
1xurPB5Collagenase 33.4.240.528
3kej3EJCollagenase 33.4.240.503
2ow9SP6Collagenase 33.4.240.502
3kek3EKCollagenase 33.4.240.485
2ozrGG1Collagenase 33.4.240.469