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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1xjwPALAspartate carbamoyltransferase catalytic subunit2.1.3.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1xjwPALAspartate carbamoyltransferase catalytic subunit2.1.3.21.000
8atcPALAspartate carbamoyltransferase catalytic subunit2.1.3.20.561
4gxs0YSGlutamate receptor 2/0.461
2gesCOKPantothenate kinase2.7.1.330.454
4dpwAGSMevalonate diphosphate decarboxylase/0.449
4n9iPCGCatabolite expression activator/0.446
3fhyATPPyridoxal kinase2.7.1.350.444
2gevCOKPantothenate kinase2.7.1.330.442
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.442
1yluFMNOxygen-insensitive NAD(P)H nitroreductase/0.441
3w233RODihydroorotate dehydrogenase (fumarate)1.3.98.10.441
1nzfUPGDNA beta-glucosyltransferase/0.440
3enkUPGUDP-glucose 4-epimerase/0.440