scPDB - Distribution of Binding site Similarity values of 1xdq entry / Site 2

Distribution of Binding site similarity measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1xdq	MTE	Protein-methionine-sulfoxide reductase catalytic subunit MsrP

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1xdq	MTE	Protein-methionine-sulfoxide reductase catalytic subunit MsrP	/	1.000
1xdy	MTE	Protein-methionine-sulfoxide reductase catalytic subunit MsrP	/	0.629
2cv2	GSU	Glutamate--tRNA ligase	6.1.1.17	0.464
2rqf	JH3	Hemolymph juvenile hormone binding protein	/	0.447
2qim	ZEA	Class 10 plant pathogenesis-related protein	/	0.442
4bft	ZVT	Pantothenate kinase	2.7.1.33	0.441