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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1wliFMNFMN-binding protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1wliFMNFMN-binding protein/1.000
3a20FMNFMN-binding protein/0.607
3a6rFMNFMN-binding protein/0.590
3a6qFMNFMN-binding protein/0.584
3vy2FMNFMN-binding protein/0.569
3awhFMNFMN-binding protein/0.549
2e83FMNFMN-binding protein/0.546
1flmFMNFMN-binding protein/0.541
3vy5FMNFMN-binding protein/0.541
1wlkFMNFMN-binding protein/0.533
3amfFMNFMN-binding protein/0.524
1f20FADNitric oxide synthase, brain1.14.13.390.472
2g247IGRenin3.4.23.150.471
2i4qUA4Renin3.4.23.150.464
2g226IGRenin3.4.23.150.451
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
2ikuLIYRenin3.4.23.150.446
3ojxFADNADPH--cytochrome P450 reductase/0.445
4gv4MEJPoly [ADP-ribose] polymerase 32.4.2.300.445
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.444
5dp2NAPCurF/0.443