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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1vyrFMNPentaerythritol tetranitrate reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1vyrFMNPentaerythritol tetranitrate reductase/1.000
1h50FMNPentaerythritol tetranitrate reductase/0.675
3p8iFMNPentaerythritol tetranitrate reductase/0.624
3p74FMNPentaerythritol tetranitrate reductase/0.623
2abbFMNPentaerythritol tetranitrate reductase/0.605
3f03FMNPentaerythritol tetranitrate reductase/0.583
3p8jFMNPentaerythritol tetranitrate reductase/0.573
3p82FMNPentaerythritol tetranitrate reductase/0.565
3p67FMNPentaerythritol tetranitrate reductase/0.562
3p62FMNPentaerythritol tetranitrate reductase/0.553
3p84FMNPentaerythritol tetranitrate reductase/0.553
1h51FMNPentaerythritol tetranitrate reductase/0.549
1h63FMNPentaerythritol tetranitrate reductase/0.530
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.512
1icqFMN12-oxophytodienoate reductase 11.3.1.420.507
4jicFMNGTN Reductase/0.504
1icsFMN12-oxophytodienoate reductase 11.3.1.420.496
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.496
1bwlFMNNADPH dehydrogenase 11.6.99.10.490
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.489
1icpFMN12-oxophytodienoate reductase 11.3.1.420.487
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.483
4tmbFMNOld yellow enzyme/0.476
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.475
1bwkFMNNADPH dehydrogenase 11.6.99.10.472
1q45FMN12-oxophytodienoate reductase 31.3.1.420.471
3atzFMNProstaglandin F2a synthase/0.469
4rnvFMNNADPH dehydrogenase 11.6.99.10.469
4df2FMNNADPH dehydrogenase/0.467
1oycFMNNADPH dehydrogenase 11.6.99.10.465
1oyaFMNNADPH dehydrogenase 11.6.99.10.461
4e2dFMNDehydrogenase/0.457
4h6kFMNNADPH dehydrogenase 11.6.99.10.451
3gkaFMNN-ethylmaleimide reductase/0.450
4tmcFMNOld yellow enzyme/0.449
4e2bFMNDehydrogenase/0.446
3tjlFMNNADPH dehydrogenase/0.444
4rnwFMNNADPH dehydrogenase 11.6.99.10.444
4rnuFMNNADPH dehydrogenase 11.6.99.10.442
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.440
4rnxFMNNADPH dehydrogenase 11.6.99.10.440