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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1vjiFMN12-oxophytodienoate reductase 11.3.1.42

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1vjiFMN12-oxophytodienoate reductase 11.3.1.421.000
1icqFMN12-oxophytodienoate reductase 11.3.1.420.627
4tmbFMNOld yellow enzyme/0.626
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.618
1icpFMN12-oxophytodienoate reductase 11.3.1.420.610
1icsFMN12-oxophytodienoate reductase 11.3.1.420.608
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.599
4rnvFMNNADPH dehydrogenase 11.6.99.10.597
1h50FMNPentaerythritol tetranitrate reductase/0.585
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.582
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.572
3f03FMNPentaerythritol tetranitrate reductase/0.569
3p82FMNPentaerythritol tetranitrate reductase/0.565
1q45FMN12-oxophytodienoate reductase 31.3.1.420.560
1vyrFMNPentaerythritol tetranitrate reductase/0.558
2abbFMNPentaerythritol tetranitrate reductase/0.558
3p74FMNPentaerythritol tetranitrate reductase/0.557
4rnwFMNNADPH dehydrogenase 11.6.99.10.555
4jicFMNGTN Reductase/0.551
1h63FMNPentaerythritol tetranitrate reductase/0.548
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.547
1bwlFMNNADPH dehydrogenase 11.6.99.10.538
4rnuFMNNADPH dehydrogenase 11.6.99.10.536
3gkaFMNN-ethylmaleimide reductase/0.531
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.525
3p62FMNPentaerythritol tetranitrate reductase/0.517
4m5pFMNNADPH dehydrogenase/0.517
3tjlFMNNADPH dehydrogenase/0.513
1oycFMNNADPH dehydrogenase 11.6.99.10.510
4e2dFMNDehydrogenase/0.510
1bwkFMNNADPH dehydrogenase 11.6.99.10.509
4df2FMNNADPH dehydrogenase/0.508
4e2bFMNDehydrogenase/0.507
4tmcFMNOld yellow enzyme/0.502
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.500
4awtFMNNADH:flavin oxidoreductase Sye1/0.499
3p67FMNPentaerythritol tetranitrate reductase/0.498
3p84FMNPentaerythritol tetranitrate reductase/0.498
1h51FMNPentaerythritol tetranitrate reductase/0.494
4h6kFMNNADPH dehydrogenase 11.6.99.10.491
1oyaFMNNADPH dehydrogenase 11.6.99.10.490
2gouFMNNADH:flavin oxidoreductase Sye1/0.484
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.482
4rnxFMNNADPH dehydrogenase 11.6.99.10.480
3p8jFMNPentaerythritol tetranitrate reductase/0.477
3p8iFMNPentaerythritol tetranitrate reductase/0.476
4uthFMNXenobiotic reductase/0.471
3atzFMNProstaglandin F2a synthase/0.468
2gqaFMNNADH:flavin oxidoreductase Sye1/0.465
3l5lFMNXenobiotic reductase/0.464
3atyFMNProstaglandin F2a synthase/0.461
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/0.460
4utlFNRXenobiotic reductase/0.457
4k7yFMNNADPH dehydrogenase 11.6.99.10.454
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.453
4qaiFMNNADPH dehydrogenase/0.450
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
4qnwFMNChanoclavine-I aldehyde reductase easA/0.442